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Protein
Submitted name:

Syntabulin (syntaxin-interacting)

Gene

sybu

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of dorsal identity Source: ZFIN
  • regulation of canonical Wnt signaling pathway Source: ZFIN
  • regulation of Wnt signaling pathway involved in dorsal/ventral axis specification Source: ZFIN

Names & Taxonomyi

Protein namesi
Submitted name:
Syntabulin (syntaxin-interacting)Imported
Gene namesi
Name:sybuImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 16

Organism-specific databases

ZFINiZDB-GENE-060929-1202. sybu.

Expressioni

Gene expression databases

BgeeiENSDARG00000060112.

Interactioni

GO - Molecular functioni

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili247 – 267Sequence analysisAdd BLAST21
Coiled coili296 – 323Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IGP3. Eukaryota.
ENOG410XQEB. LUCA.
GeneTreeiENSGT00520000055634.
InParanoidiE7EXJ7.
OMAiKEVTVRH.
OrthoDBiEOG091G07I1.
TreeFamiTF332407.

Family and domain databases

InterProiView protein in InterPro
IPR026198. Syntabulin.
IPR028197. Syntaphilin/Syntabulin.
PANTHERiPTHR16208. PTHR16208. 1 hit.
PTHR16208:SF4. PTHR16208:SF4. 1 hit.
PfamiView protein in Pfam
PF15290. Syntaphilin. 1 hit.

Sequencei

Sequence statusi: Complete.

E7EXJ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPLQTYEVK EKRNMRSRIP RFVLHPLRTK EKELSVSNMP LSEEESKDFD
60 70 80 90 100
ISSQHSKRTI SPNSLSSDDT GCPSSQCASP SKTPSGSDNS SLASPGLGER
110 120 130 140 150
KVKRVRMNVE AEWSAPTQKH KREEQQRTSI MHKGSETDFS SSSSAGSYKT
160 170 180 190 200
RETQLSNSAG KNLSSRSRGP HIRSLPVFKP AGSPSAPRDA ELYAPIRTPP
210 220 230 240 250
KTPSFTNSSS CSNSSSSRRR TAPVRYHSCG DNHGIKPPNP EQYLTPLQQK
260 270 280 290 300
EVAIRHLKTK LRDSENTVCD RESEIEELKS QLGRMREDWI EEECHRVEAQ
310 320 330 340 350
LALKEARKEI KQLRQVVETM KNSLMEKDKG IQKYFIDINI QNRKLESLLH
360 370 380 390 400
SMELAQNGCN LQDEPTLDFI CEAPESSTEA KMELELHCGE QAVEEMANSE
410 420 430 440 450
LLINDEMVNR VEILMSTAVD SSQDGSTKII SQPGLSCLEP SVSEKSTKEH
460 470 480 490 500
VSSIPIGAED KGIQTDDVIY STDLQTLLYQ LLKLQGGGFP GLLVPSPNQS
510 520 530 540 550
HDISSAQAPK KSQKEELPEA HEQDVAISTA QIVPSDSGLG FSEPEVGPEF
560 570 580 590 600
MEEMNSKNKA VVGKNHWSNN FFVDLVAVAA PVLPTVAWLY SQHGLVGGAP
610 620
VYNIASLIRG CCVMGLHSLR HVSHGPDT
Length:628
Mass (Da):69,382
Last modified:January 20, 2016 - v2
Checksum:iB14367F61E92222D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925805 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSDART00000084381; ENSDARP00000078816; ENSDARG00000060112.
ENSDART00000122081; ENSDARP00000104835; ENSDARG00000060112.

Similar proteinsi

Entry informationi

Entry nameiE7EXJ7_DANRE
AccessioniPrimary (citable) accession number: E7EXJ7
Secondary accession number(s): F1RD86
Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: January 20, 2016
Last modified: January 31, 2018
This is version 46 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported