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E6XFR1 (E6XFR1_SHEP2) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sput200_1479 EMBL ADV53943.1
OrganismShewanella putrefaciens (strain 200) [Complete proteome] [HAMAP] EMBL ADV53943.1
Taxonomic identifier399804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
E6XFR1 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 8DC902710802647A

FASTA54960,764
        10         20         30         40         50         60 
MTQKLPRQAT ASEESLMRIF TVPEDAESTL SIIEQKLSED LAGFLGDSIA ALEKPLSEIE 

        70         80         90        100        110        120 
TDFQAFKIPT QPRFVSDYTD EIMQNLVAHS VHTSAPSFIG HMTSALPYFV LPLSKMMVGL 

       130        140        150        160        170        180 
NQNLVKIETS KAFTPLERQV LGMMHQLIYA QDTDFYQSWM HSANHSLGAF CSGGTVANIT 

       190        200        210        220        230        240 
ALWIARNQLL KADGEFKGVT REGLLKALRY YGYDDLAILV SERGHYSLGK AVDLLGIGRD 

       250        260        270        280        290        300 
NIISIPTDSH NKVDIAKMRE AALELARKNI KVLAIVGVAG TTETGNVDPL IELAALAKEL 

       310        320        330        340        350        360 
NCHFHVDAAW GGASLLSNKY RHLLAGIELA DSVTIDAHKQ MYVPMGAGMV LFKNPEFAHA 

       370        380        390        400        410        420 
IAHHAEYILR RGSKDLGSQT LEGSRPGMAM LVHACLQIIG LDGYEILINN SIEKARYFAE 

       430        440        450        460        470        480 
QIKAHKDFEL VTEPELCLLT YRYVPAKVQA AMQVAIEQGD TAKLARFNEL LDGLTQFIQK 

       490        500        510        520        530        540 
HQREQGKSFV SRTRISPARY FRQATVVFRV VLANPLTSHE ILNQVLVEQS EIAALDKEFL 


PALLAMVAE 

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References

[1]"Complete sequence of Shewanella putrefaciens 200."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Chang Y.-J., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N. expand/collapse author list , Kolker E., Lawrence C., McCue L.A., DiChristina T., Nealson K., Fredrickson J.K., Woyke T.
Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 200.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002457 Genomic DNA. Translation: ADV53943.1.
RefSeqYP_006009409.1. NC_017566.1.

3D structure databases

ProteinModelPortalE6XFR1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADV53943; ADV53943; Sput200_1479.
GeneID12604700.
KEGGshp:Sput200_1479.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.

Enzyme and pathway databases

BioCycSPUT399804:GLK4-1510-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE6XFR1_SHEP2
AccessionPrimary (citable) accession number: E6XFR1
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: October 16, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)