E6X4J3 (E6X4J3_CELAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribosomal large subunit pseudouridine synthase B EMBL ADV48293.1
EC=5.4.99.- EMBL ADV48293.1

Gene names

Ordered Locus Names:

Celal_0968

Organism

Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) [Complete proteome] [HAMAP] EMBL ADV48293.1

Taxonomic identifier

688270 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Cellulophaga › Cellulophaga algicola

Protein attributes

Sequence length	280 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 EMBL ADV48293.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E6X4J3 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: 0E9C92FD62F2EE51	FASTA	280	31,281
	10 20 30 40 50 60 MSRSDSNNDN KSSGRQGGTF RKKSYARGNA PMKKNVETRK PSNPNVLRLN RYVANSGVCS 70 80 90 100 110 120 RREADIYIAA GSVTVNGKPV IEMGYKVQLS DEVRFDGRLL NPIKKEYVVL NKPKDFATST 130 140 150 160 170 180 RDGAGNRTAM GLVSNASKAK LLPVGKMDKS STGLLLFTND GDLTARLNSP KNGLRKIFHV 190 200 210 220 230 240 ELTKPLKSTD LKRIKEGIEI EESVVRIQDI SYIENAPKTQ VGVEIFSTRN NIVRRLFEKL 250 260 270 280 DYDVVKLDLV VYAGLTKKDL PRGHWRPLTE QEIINLGMIK

References

[1]

"Complete genome sequence of Cellulophaga algicola type strain (IC166)." Abt B., Lu M., Misra M., Han C., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J., Tapia R., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A. , Chen A., Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Detter J., Brambilla E., Rohde M., Tindall B., Goker M., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H., Lapidus A. Stand. Genomic Sci. 4:72-80(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14237 / IC166 / ACAM 630.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002453 Genomic DNA. Translation: ADV48293.1.
RefSeq	YP_004163791.1. NC_014934.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV48293; ADV48293; Celal_0968.
GeneID	10143355.
KEGG	cao:Celal_0968.
PATRIC	46907368. VBICelAlg158510_0975.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000044954.
KO	K06178.
Enzyme and pathway databases
BioCyc	CALG688270:GHJ1-984-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6X4J3_CELAD

Accession

Primary (citable) accession number: E6X4J3

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)