E6W3Q9 (E6W3Q9_DESIS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Aspartate 1-decarboxylase HAMAP-Rule MF_00446
EC=4.1.1.11 HAMAP-Rule MF_00446

Alternative name(s):
Aspartate alpha-decarboxylase HAMAP-Rule MF_00446

Gene names

Name:	panD HAMAP-Rule MF_00446
Ordered Locus Names:	Selin_2220

Organism

Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) [Complete proteome] [HAMAP] EMBL ADU66940.1

Taxonomic identifier

653733 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chrysiogenetes › Chrysiogenetes › Chrysiogenales › Chrysiogenaceae › Desulfurispirillum › Desulfurispirillum indicum

Protein attributes

Sequence length	130 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine By similarity. HAMAP-Rule MF_00446
Catalytic activity	L-aspartate = beta-alanine + CO2. HAMAP-Rule MF_00446
Cofactor	Pyruvoyl group By similarity. HAMAP-Rule MF_00446 PIRSR PIRSR006246-1
Pathway	Cofactor biosynthesis; (R)-pantothenate biosynthesis; beta-alanine from L-aspartate: step 1/1. HAMAP-Rule MF_00446
Subunit structure	Heterooctamer of four alpha and four beta subunits By similarity. HAMAP-Rule MF_00446
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00446.
Post-translational modification	Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus By similarity. HAMAP-Rule MF_00446 PIRSR PIRSR006246-3
Sequence similarities	Belongs to the PanD family. HAMAP-Rule MF_00446

Ontologies

Keywords
Biological process	Pantothenate biosynthesis HAMAP-Rule MF_00446
Cellular component	Cytoplasm HAMAP-Rule MF_00446
Ligand	Pyruvate HAMAP-Rule MF_00446 PIRSR PIRSR006246-1 Schiff base HAMAP-Rule MF_00446 PIRSR PIRSR006246-1
Molecular function	Decarboxylase HAMAP-Rule MF_00446 Lyase
PTM	Autocatalytic cleavage HAMAP-Rule MF_00446 Zymogen HAMAP-Rule MF_00446
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine biosynthetic process Inferred from electronic annotation. Source: InterPro pantothenate biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	aspartate 1-decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Region	73 – 75	3	Substrate binding By similarity HAMAP-Rule MF_00446 PIRSR PIRSR006246-2
Sites
	Active site	25	1	Schiff-base intermediate with substrate; via pyruvic acid By similarity HAMAP-Rule MF_00446 PIRSR PIRSR006246-1
	Active site	58	1	Proton donor By similarity HAMAP-Rule MF_00446 PIRSR PIRSR006246-1
	Binding site	57	1	Substrate By similarity HAMAP-Rule MF_00446 PIRSR PIRSR006246-2
Amino acid modifications
	Modified residue	25	1	Pyruvic acid (Ser) By similarity HAMAP-Rule MF_00446 PIRSR PIRSR006246-3

Sequences

	Sequence		Length	Mass (Da)
	E6W3Q9 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: FF032F69B0CF3685	FASTA	130	14,428
	10 20 30 40 50 60 MLRTMCKSKI HRATVTEANL HYVGSITIDR ELMEAADLLE YEQVAIVDIN NGARFETYII 70 80 90 100 110 120 EGEPGSGVIC LNGAAARLVQ PGDLIIIISY AQMEDAVART LKPRIIHVDE HNRIDWSITQ 130 GVEELESACC

References

[1]

"Complete sequence of Desulfurispirillum indicum S5." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Haggblom M., Rauschenbach I., Bini E., Woyke T. Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1389 / S5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002432 Genomic DNA. Translation: ADU66940.1.
RefSeq	YP_004113496.1. NC_014836.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADU66940; ADU66940; Selin_2220.
GeneID	10073760.
KEGG	din:Selin_2220.
PATRIC	45169424. VBIDesInd86994_2249.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000221007.
KO	K01579.
OMA	LYSKIHR.
Enzyme and pathway databases
BioCyc	DIND653733:GHGZ-2268-MONOMER.
UniPathway	UPA00028; UER00002.
Family and domain databases
Gene3D	2.40.40.20. 1 hit.
HAMAP	MF_00446. PanD.
InterPro	IPR009010. Asp_de-COase-like_dom. IPR003190. Asp_decarbox. [Graphical view]
PANTHER	PTHR21012. PTHR21012. 1 hit.
Pfam	PF02261. Asp_decarbox. 1 hit. [Graphical view]
PIRSF	PIRSF006246. Asp_decarbox. 1 hit.
SUPFAM	SSF50692. Asp_decarb_fold. 1 hit.
TIGRFAMs	TIGR00223. panD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E6W3Q9_DESIS

Accession

Primary (citable) accession number: E6W3Q9

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)