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Protein
Submitted name:

Ribulose bisphosphate carboxylase large chain

Gene

Rpdx1_3352

Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-3396-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose bisphosphate carboxylase large chainImported
Gene namesi
Ordered Locus Names:Rpdx1_3352Imported
OrganismiRhodopseudomonas palustris (strain DX-1)Imported
Taxonomic identifieri652103 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001402 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi652103.Rpdx1_3352.

Structurei

3D structure databases

ProteinModelPortaliE6VQD3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000230274.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

E6VQD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNERIVVTYQ VAAAPAEIAA RAEALAIEQS VECPLAAVTE QRIRDEILGR
60 70 80 90 100
VEAIEPIGEA RFAVRISLAS ATAPAEPGQL INMLFGNSSI LPDVTLADVE
110 120 130 140 150
LPPAYPAAFG GPKFGIGGIR ARLGVPRRAL TASALKPQGL PPEALASLAH
160 170 180 190 200
RLALGGIDLI KDDHGIADQA FSPFAARVPA VAAALRQASD SCGATTLYAP
210 220 230 240 250
HVSGSLDDMR RQLDIVRREE LPAVMLMPMV VGLANFHLVA KEAAGLIVLA
260 270 280 290 300
HPSLAGAQRI APDLLLGKLF RLLGADATIF PHHGGRFAYA PGTCRALAGA
310 320 330 340 350
ARRDWHDLKP CLPVPAGGIA IDRIAALLAF YGSDVMLLIG GSLLAAGEHL
360
TEQAARFTAE VASHGQ
Length:366
Mass (Da):38,230
Last modified:March 8, 2011 - v1
Checksum:i3DFC3E7838B0C9A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU44923.1.
RefSeqiWP_013503039.1. NC_014834.1.
YP_004109656.1. NC_014834.1.

Genome annotation databases

EnsemblBacteriaiADU44923; ADU44923; Rpdx1_3352.
KEGGirpx:Rpdx1_3352.
PATRICi45347083. VBIRhoPal82507_3397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU44923.1.
RefSeqiWP_013503039.1. NC_014834.1.
YP_004109656.1. NC_014834.1.

3D structure databases

ProteinModelPortaliE6VQD3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi652103.Rpdx1_3352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU44923; ADU44923; Rpdx1_3352.
KEGGirpx:Rpdx1_3352.
PATRICi45347083. VBIRhoPal82507_3397.

Phylogenomic databases

HOGENOMiHOG000230274.
KOiK01601.

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-3396-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Rhodopseudomonas palustris DX-1."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DX-1Imported.

Entry informationi

Entry nameiE6VQD3_RHOPX
AccessioniPrimary (citable) accession number: E6VQD3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: June 24, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.