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E6VFH9

- E6VFH9_RHOPX

UniProt

E6VFH9 - E6VFH9_RHOPX

Protein

ATP-dependent Clp protease ATP-binding subunit ClpX

Gene

clpX

Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.UniRule annotationSAAS annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri15 – 4026C4-typeUniRule annotationAdd
    BLAST
    Nucleotide bindingi119 – 1268ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. nucleoside-triphosphatase activity Source: InterPro
    3. peptidase activity Source: UniProtKB-KW
    4. zinc ion binding Source: InterPro

    GO - Biological processi

    1. protein folding Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    ChaperoneUniRule annotationSAAS annotation, Hydrolase, ProteaseImported

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotationImported, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    BioCyciRPAL652103:GHQR-2512-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    ATP-dependent Clp protease ATP-binding subunit ClpXUniRule annotation
    Gene namesi
    Name:clpXUniRule annotation
    Ordered Locus Names:Rpdx1_2480Imported
    OrganismiRhodopseudomonas palustris (strain DX-1)Imported
    Taxonomic identifieri652103 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001402: Chromosome

    Interactioni

    Subunit structurei

    Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.UniRule annotationSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ClpX chaperone family.UniRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri15 – 4026C4-typeUniRule annotationAdd
    BLAST

    Keywords - Domaini

    Zinc-fingerUniRule annotationSAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000010093.
    KOiK03544.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    HAMAPiMF_00175. ClpX.
    InterProiIPR003593. AAA+_ATPase.
    IPR003959. ATPase_AAA_core.
    IPR019489. Clp_ATPase_C.
    IPR004487. Clp_protease_ATP-bd_su_ClpX.
    IPR027417. P-loop_NTPase.
    IPR010603. Znf_CppX_C4.
    [Graphical view]
    PfamiPF07724. AAA_2. 1 hit.
    PF10431. ClpB_D2-small. 1 hit.
    PF06689. zf-C4_ClpX. 1 hit.
    [Graphical view]
    SMARTiSM00382. AAA. 1 hit.
    SM01086. ClpB_D2-small. 1 hit.
    SM00994. zf-C4_ClpX. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00382. clpX. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    E6VFH9-1 [UniParc]FASTAAdd to Basket

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    MSKVGTSDSK NTLYCSFCGK SQHEVRKLIA GPTVFICDEC VELCMDIIRE    50
    ENKSSLVKSR DGIPTPKEIC KVLDDYVIGQ GHAKKVLSVA VHNHYKRLNH 100
    QTKHNDVELA KSNILLIGPT GSGKTLLAQT LARILDVPFT MADATTLTEA 150
    GYVGEDVENI ILKLLQAADY NVERAQRGIV YIDEIDKISR KSDNPSITRD 200
    VSGEGVQQAL LKIMEGTVAS VPPQGGRKHP QQEFLQVDTT NILFICGGAF 250
    AGLEKIISGR GRSTSIGFAA QVLAPEDRRT GEIFRHVEPE DLLKYGLIPE 300
    FVGRLPVVAT LEDLDETSLK KILTDPKNAL VKQYQRLFEM ENIELTFADE 350
    ALGAVARKAI ERKTGARGLR SILESILLET MFDLPGLEGV EEVVISREVV 400
    EGTARPLYIY ADRTDRAAET SASA 424
    Length:424
    Mass (Da):46,594
    Last modified:March 8, 2011 - v1
    Checksum:i01E731BB45FA4F6A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002418 Genomic DNA. Translation: ADU44071.1.
    RefSeqiWP_013502196.1. NC_014834.1.
    YP_004108804.1. NC_014834.1.

    Genome annotation databases

    EnsemblBacteriaiADU44071; ADU44071; Rpdx1_2480.
    GeneIDi10064698.
    KEGGirpx:Rpdx1_2480.
    PATRICi45345300. VBIRhoPal82507_2523.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002418 Genomic DNA. Translation: ADU44071.1 .
    RefSeqi WP_013502196.1. NC_014834.1.
    YP_004108804.1. NC_014834.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU44071 ; ADU44071 ; Rpdx1_2480 .
    GeneIDi 10064698.
    KEGGi rpx:Rpdx1_2480.
    PATRICi 45345300. VBIRhoPal82507_2523.

    Phylogenomic databases

    HOGENOMi HOG000010093.
    KOi K03544.

    Enzyme and pathway databases

    BioCyci RPAL652103:GHQR-2512-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    HAMAPi MF_00175. ClpX.
    InterProi IPR003593. AAA+_ATPase.
    IPR003959. ATPase_AAA_core.
    IPR019489. Clp_ATPase_C.
    IPR004487. Clp_protease_ATP-bd_su_ClpX.
    IPR027417. P-loop_NTPase.
    IPR010603. Znf_CppX_C4.
    [Graphical view ]
    Pfami PF07724. AAA_2. 1 hit.
    PF10431. ClpB_D2-small. 1 hit.
    PF06689. zf-C4_ClpX. 1 hit.
    [Graphical view ]
    SMARTi SM00382. AAA. 1 hit.
    SM01086. ClpB_D2-small. 1 hit.
    SM00994. zf-C4_ClpX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00382. clpX. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Rhodopseudomonas palustris DX-1."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DX-1Imported.

    Entry informationi

    Entry nameiE6VFH9_RHOPX
    AccessioniPrimary (citable) accession number: E6VFH9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3