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Protein

ATP-dependent Clp protease ATP-binding subunit ClpX

Gene

clpX

Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.UniRule annotationSAAS annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri15 – 4026C4-typeUniRule annotationAdd
BLAST
Nucleotide bindingi119 – 1268ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ChaperoneUniRule annotationSAAS annotation, Hydrolase, ProteaseImported

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, Metal-binding, Nucleotide-binding, Zinc

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-2512-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent Clp protease ATP-binding subunit ClpXUniRule annotationSAAS annotation
Gene namesi
Name:clpXUniRule annotation
Ordered Locus Names:Rpdx1_2480Imported
OrganismiRhodopseudomonas palustris (strain DX-1)Imported
Taxonomic identifieri652103 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001402 Componenti: Chromosome

Interactioni

Subunit structurei

Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi652103.Rpdx1_2480.

Family & Domainsi

Sequence similaritiesi

Belongs to the ClpX chaperone family.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri15 – 4026C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000010093.
KOiK03544.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_00175. ClpX.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR019489. Clp_ATPase_C.
IPR004487. Clp_protease_ATP-bd_su_ClpX.
IPR027417. P-loop_NTPase.
IPR010603. Znf_CppX_C4.
[Graphical view]
PfamiPF07724. AAA_2. 1 hit.
PF10431. ClpB_D2-small. 1 hit.
PF06689. zf-C4_ClpX. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
SM01086. ClpB_D2-small. 1 hit.
SM00994. zf-C4_ClpX. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00382. clpX. 1 hit.

Sequencei

Sequence statusi: Complete.

E6VFH9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVGTSDSK NTLYCSFCGK SQHEVRKLIA GPTVFICDEC VELCMDIIRE
60 70 80 90 100
ENKSSLVKSR DGIPTPKEIC KVLDDYVIGQ GHAKKVLSVA VHNHYKRLNH
110 120 130 140 150
QTKHNDVELA KSNILLIGPT GSGKTLLAQT LARILDVPFT MADATTLTEA
160 170 180 190 200
GYVGEDVENI ILKLLQAADY NVERAQRGIV YIDEIDKISR KSDNPSITRD
210 220 230 240 250
VSGEGVQQAL LKIMEGTVAS VPPQGGRKHP QQEFLQVDTT NILFICGGAF
260 270 280 290 300
AGLEKIISGR GRSTSIGFAA QVLAPEDRRT GEIFRHVEPE DLLKYGLIPE
310 320 330 340 350
FVGRLPVVAT LEDLDETSLK KILTDPKNAL VKQYQRLFEM ENIELTFADE
360 370 380 390 400
ALGAVARKAI ERKTGARGLR SILESILLET MFDLPGLEGV EEVVISREVV
410 420
EGTARPLYIY ADRTDRAAET SASA
Length:424
Mass (Da):46,594
Last modified:March 8, 2011 - v1
Checksum:i01E731BB45FA4F6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU44071.1.
RefSeqiWP_013502196.1. NC_014834.1.
YP_004108804.1. NC_014834.1.

Genome annotation databases

EnsemblBacteriaiADU44071; ADU44071; Rpdx1_2480.
KEGGirpx:Rpdx1_2480.
PATRICi45345300. VBIRhoPal82507_2523.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU44071.1.
RefSeqiWP_013502196.1. NC_014834.1.
YP_004108804.1. NC_014834.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi652103.Rpdx1_2480.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU44071; ADU44071; Rpdx1_2480.
KEGGirpx:Rpdx1_2480.
PATRICi45345300. VBIRhoPal82507_2523.

Phylogenomic databases

HOGENOMiHOG000010093.
KOiK03544.

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-2512-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_00175. ClpX.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR019489. Clp_ATPase_C.
IPR004487. Clp_protease_ATP-bd_su_ClpX.
IPR027417. P-loop_NTPase.
IPR010603. Znf_CppX_C4.
[Graphical view]
PfamiPF07724. AAA_2. 1 hit.
PF10431. ClpB_D2-small. 1 hit.
PF06689. zf-C4_ClpX. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
SM01086. ClpB_D2-small. 1 hit.
SM00994. zf-C4_ClpX. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00382. clpX. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Rhodopseudomonas palustris DX-1."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DX-1Imported.

Entry informationi

Entry nameiE6VFH9_RHOPX
AccessioniPrimary (citable) accession number: E6VFH9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: June 24, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.