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E6VBL8

- E6VBL8_RHOPX

UniProt

E6VBL8 - E6VBL8_RHOPX

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rpdx1_0962

Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPAL652103:GHQR-974-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Rpdx1_0962Imported
    OrganismiRhodopseudomonas palustris (strain DX-1)Imported
    Taxonomic identifieri652103 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001402: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6VBL8-1 [UniParc]FASTAAdd to Basket

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    MNRFAELLDR LGYEPGRNNK LRLITNYFRA VEDPDRGWAL AALTGALSFR    50
    HAKPGLIRAL IAERTDPVLF GLSYDYVGDL SETVALMWPS PHAQRNSPPP 100
    CGEGSGVGVH TGTPSSGRPH PNPLPQAGEG VRCASGEDVA SAEGSVNTGH 150
    NNPPPPTLTE IVTTLHSLGK AELPAQLARW LDELDETGRW ALLKLVTGAL 200
    RIGVSARLAK TAAAALGNKD PHDVELVWPG IEPPYDELFA WLEGRGPQPA 250
    SRDPAPFRPV MLAHAVDDTD FAGMDPADYI AEWKWDGIRV QAVSGLNEHG 300
    DCVVRLYSRS GEDITMSFPD LLPSLRLPGA IDGELLVLRD KRVQSFNVLQ 350
    QRLNRKSVTP KLTKDYPIHL RAYDLLGDGD EDLRTLPFAE RRTRLETLIA 400
    RLGDPKVDLS PIVAFDDWDG LRAARRDPAS AGAGLDADAV EGVMLKRRDA 450
    PYLPGRPKGQ WWKWKHDPHI IDAVLMYAQR GHGKRSSYYS DYTFGVWTEG 500
    DGGDQLVPVG KAYFGFTDEE LLQIDRFVRR NTTEKFGPVR HVVHEPDKGL 550
    VLEVAFEGLQ RSPRHKSGVA MRFPRISRLR WDKPPKDADR LETLERMLKA 600
    ESAKPHPAGA RGH 613
    Length:613
    Mass (Da):67,838
    Last modified:March 8, 2011 - v1
    Checksum:i06F73C0CD090A228
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002418 Genomic DNA. Translation: ADU42590.1.
    RefSeqiWP_013500749.1. NC_014834.1.
    YP_004107323.1. NC_014834.1.

    Genome annotation databases

    EnsemblBacteriaiADU42590; ADU42590; Rpdx1_0962.
    GeneIDi10063160.
    KEGGirpx:Rpdx1_0962.
    PATRICi45342129. VBIRhoPal82507_0973.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002418 Genomic DNA. Translation: ADU42590.1 .
    RefSeqi WP_013500749.1. NC_014834.1.
    YP_004107323.1. NC_014834.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU42590 ; ADU42590 ; Rpdx1_0962 .
    GeneIDi 10063160.
    KEGGi rpx:Rpdx1_0962.
    PATRICi 45342129. VBIRhoPal82507_0973.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci RPAL652103:GHQR-974-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Rhodopseudomonas palustris DX-1."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DX-1Imported.

    Entry informationi

    Entry nameiE6VBL8_RHOPX
    AccessioniPrimary (citable) accession number: E6VBL8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3