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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rpdx1_0962

Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-974-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rpdx1_0962Imported
OrganismiRhodopseudomonas palustris (strain DX-1)Imported
Taxonomic identifieri652103 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001402 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6VBL8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LGYEPGRNNK LRLITNYFRA VEDPDRGWAL AALTGALSFR
60 70 80 90 100
HAKPGLIRAL IAERTDPVLF GLSYDYVGDL SETVALMWPS PHAQRNSPPP
110 120 130 140 150
CGEGSGVGVH TGTPSSGRPH PNPLPQAGEG VRCASGEDVA SAEGSVNTGH
160 170 180 190 200
NNPPPPTLTE IVTTLHSLGK AELPAQLARW LDELDETGRW ALLKLVTGAL
210 220 230 240 250
RIGVSARLAK TAAAALGNKD PHDVELVWPG IEPPYDELFA WLEGRGPQPA
260 270 280 290 300
SRDPAPFRPV MLAHAVDDTD FAGMDPADYI AEWKWDGIRV QAVSGLNEHG
310 320 330 340 350
DCVVRLYSRS GEDITMSFPD LLPSLRLPGA IDGELLVLRD KRVQSFNVLQ
360 370 380 390 400
QRLNRKSVTP KLTKDYPIHL RAYDLLGDGD EDLRTLPFAE RRTRLETLIA
410 420 430 440 450
RLGDPKVDLS PIVAFDDWDG LRAARRDPAS AGAGLDADAV EGVMLKRRDA
460 470 480 490 500
PYLPGRPKGQ WWKWKHDPHI IDAVLMYAQR GHGKRSSYYS DYTFGVWTEG
510 520 530 540 550
DGGDQLVPVG KAYFGFTDEE LLQIDRFVRR NTTEKFGPVR HVVHEPDKGL
560 570 580 590 600
VLEVAFEGLQ RSPRHKSGVA MRFPRISRLR WDKPPKDADR LETLERMLKA
610
ESAKPHPAGA RGH
Length:613
Mass (Da):67,838
Last modified:March 7, 2011 - v1
Checksum:i06F73C0CD090A228
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU42590.1.
RefSeqiYP_004107323.1. NC_014834.1.

Genome annotation databases

EnsemblBacteriaiADU42590; ADU42590; Rpdx1_0962.
KEGGirpx:Rpdx1_0962.
PATRICi45342129. VBIRhoPal82507_0973.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002418 Genomic DNA. Translation: ADU42590.1.
RefSeqiYP_004107323.1. NC_014834.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU42590; ADU42590; Rpdx1_0962.
KEGGirpx:Rpdx1_0962.
PATRICi45342129. VBIRhoPal82507_0973.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-974-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Rhodopseudomonas palustris DX-1."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
    Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DX-1Imported.

Entry informationi

Entry nameiE6VBL8_RHOPX
AccessioniPrimary (citable) accession number: E6VBL8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2011
Last sequence update: March 7, 2011
Last modified: March 31, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.