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E6VBL8

- E6VBL8_RHOPX

UniProt

E6VBL8 - E6VBL8_RHOPX

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Rpdx1_0962
Organism
Rhodopseudomonas palustris (strain DX-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL652103:GHQR-974-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rpdx1_0962Imported
OrganismiRhodopseudomonas palustris (strain DX-1)Imported
Taxonomic identifieri652103 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001402: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6VBL8-1 [UniParc]FASTAAdd to Basket

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MNRFAELLDR LGYEPGRNNK LRLITNYFRA VEDPDRGWAL AALTGALSFR    50
HAKPGLIRAL IAERTDPVLF GLSYDYVGDL SETVALMWPS PHAQRNSPPP 100
CGEGSGVGVH TGTPSSGRPH PNPLPQAGEG VRCASGEDVA SAEGSVNTGH 150
NNPPPPTLTE IVTTLHSLGK AELPAQLARW LDELDETGRW ALLKLVTGAL 200
RIGVSARLAK TAAAALGNKD PHDVELVWPG IEPPYDELFA WLEGRGPQPA 250
SRDPAPFRPV MLAHAVDDTD FAGMDPADYI AEWKWDGIRV QAVSGLNEHG 300
DCVVRLYSRS GEDITMSFPD LLPSLRLPGA IDGELLVLRD KRVQSFNVLQ 350
QRLNRKSVTP KLTKDYPIHL RAYDLLGDGD EDLRTLPFAE RRTRLETLIA 400
RLGDPKVDLS PIVAFDDWDG LRAARRDPAS AGAGLDADAV EGVMLKRRDA 450
PYLPGRPKGQ WWKWKHDPHI IDAVLMYAQR GHGKRSSYYS DYTFGVWTEG 500
DGGDQLVPVG KAYFGFTDEE LLQIDRFVRR NTTEKFGPVR HVVHEPDKGL 550
VLEVAFEGLQ RSPRHKSGVA MRFPRISRLR WDKPPKDADR LETLERMLKA 600
ESAKPHPAGA RGH 613
Length:613
Mass (Da):67,838
Last modified:March 8, 2011 - v1
Checksum:i06F73C0CD090A228
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002418 Genomic DNA. Translation: ADU42590.1.
RefSeqiWP_013500749.1. NC_014834.1.
YP_004107323.1. NC_014834.1.

Genome annotation databases

EnsemblBacteriaiADU42590; ADU42590; Rpdx1_0962.
GeneIDi10063160.
KEGGirpx:Rpdx1_0962.
PATRICi45342129. VBIRhoPal82507_0973.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002418 Genomic DNA. Translation: ADU42590.1 .
RefSeqi WP_013500749.1. NC_014834.1.
YP_004107323.1. NC_014834.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU42590 ; ADU42590 ; Rpdx1_0962 .
GeneIDi 10063160.
KEGGi rpx:Rpdx1_0962.
PATRICi 45342129. VBIRhoPal82507_0973.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.

Enzyme and pathway databases

BioCyci RPAL652103:GHQR-974-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Rhodopseudomonas palustris DX-1."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Misra M., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Logan B., Oda Y., Harwood C., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DX-1.

Entry informationi

Entry nameiE6VBL8_RHOPX
AccessioniPrimary (citable) accession number: E6VBL8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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