SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

E6V9G9

- E6V9G9_VARPE

UniProt

E6V9G9 - E6V9G9_VARPE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: ATP dependent DNA ligase
Gene
Varpa_5498
Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-5562-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_5498Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V9G9-1 [UniParc]FASTAAdd to Basket

« Hide

MKDFAALYRE LDASTSNLVK QAALQRYLRN ADAADAAWAV YFLAGGKPRQ    50
LVPTKLLRLL AQEAAGLPEW LFDESYDAVG DLAETIALLL PPPSEVHDLG 100
LAAWVEQHLL PLREAAKTAP EELADRLRAQ WRQLAAEERL VYFKLITGAF 150
RVGVSKLQVT QALAAVGGID AKRVAQRLMG YTHIGARPRA GDYATLIAPE 200
SDSEQVQKTS GQPYPFFLAH PFNIPLEQFD AVLGPPADWI VEWKWDGIRA 250
QLVKRAGVVW LWSRGEELVT DRFPELAVLG EALPDGTVLD GEIAVWREDK 300
VQPFAELQKR IGRKTLGAKL LRDIPVVLLA YDILEWEGRD LRTEPQSARR 350
MLLDDLVTRM QHPSLLPSPM LTGLDWSDLA RQREAARTMG VEGMMLKRRD 400
SQYGVGRTKD VGVWWKWKID PLSIDAVLIY AQRGHGRRAS LFSDYTFAVW 450
DGPPEQEDRK LVPFAKAYSG LTDAEMARVD AIIRKTTVES FGPVKSVKPT 500
LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD TLQTLAALLP 550
S 551
Length:551
Mass (Da):61,712
Last modified:March 8, 2011 - v1
Checksum:i25ED0DCDFF11D22D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU39653.1.
RefSeqiWP_013543854.1. NC_014931.1.
YP_004157764.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU39653; ADU39653; Varpa_5498.
GeneIDi10132371.
KEGGivpe:Varpa_5498.
PATRICi45397165. VBIVarPar156291_5569.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU39653.1 .
RefSeqi WP_013543854.1. NC_014931.1.
YP_004157764.1. NC_014931.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU39653 ; ADU39653 ; Varpa_5498 .
GeneIDi 10132371.
KEGGi vpe:Varpa_5498.
PATRICi 45397165. VBIVarPar156291_5569.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.

Enzyme and pathway databases

BioCyci VPAR595537:GHGJ-5562-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPS.

Entry informationi

Entry nameiE6V9G9_VARPE
AccessioniPrimary (citable) accession number: E6V9G9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi