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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_5498

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-5562-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_5498Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V9G9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKDFAALYRE LDASTSNLVK QAALQRYLRN ADAADAAWAV YFLAGGKPRQ
60 70 80 90 100
LVPTKLLRLL AQEAAGLPEW LFDESYDAVG DLAETIALLL PPPSEVHDLG
110 120 130 140 150
LAAWVEQHLL PLREAAKTAP EELADRLRAQ WRQLAAEERL VYFKLITGAF
160 170 180 190 200
RVGVSKLQVT QALAAVGGID AKRVAQRLMG YTHIGARPRA GDYATLIAPE
210 220 230 240 250
SDSEQVQKTS GQPYPFFLAH PFNIPLEQFD AVLGPPADWI VEWKWDGIRA
260 270 280 290 300
QLVKRAGVVW LWSRGEELVT DRFPELAVLG EALPDGTVLD GEIAVWREDK
310 320 330 340 350
VQPFAELQKR IGRKTLGAKL LRDIPVVLLA YDILEWEGRD LRTEPQSARR
360 370 380 390 400
MLLDDLVTRM QHPSLLPSPM LTGLDWSDLA RQREAARTMG VEGMMLKRRD
410 420 430 440 450
SQYGVGRTKD VGVWWKWKID PLSIDAVLIY AQRGHGRRAS LFSDYTFAVW
460 470 480 490 500
DGPPEQEDRK LVPFAKAYSG LTDAEMARVD AIIRKTTVES FGPVKSVKPT
510 520 530 540 550
LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD TLQTLAALLP

S
Length:551
Mass (Da):61,712
Last modified:March 8, 2011 - v1
Checksum:i25ED0DCDFF11D22D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU39653.1.
RefSeqiWP_013543854.1. NC_014931.1.
YP_004157764.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU39653; ADU39653; Varpa_5498.
GeneIDi10132371.
KEGGivpe:Varpa_5498.
PATRICi45397165. VBIVarPar156291_5569.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU39653.1.
RefSeqiWP_013543854.1. NC_014931.1.
YP_004157764.1. NC_014931.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU39653; ADU39653; Varpa_5498.
GeneIDi10132371.
KEGGivpe:Varpa_5498.
PATRICi45397165. VBIVarPar156291_5569.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-5562-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPSImported.

Entry informationi

Entry nameiE6V9G9_VARPE
AccessioniPrimary (citable) accession number: E6V9G9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: January 7, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.