E6V9G9 (E6V9G9_VARPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADU39653.1

Gene names

Ordered Locus Names:

Varpa_5498 EMBL ADU39653.1

Organism

Variovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU39653.1

Taxonomic identifier

595537 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	551 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADU39653.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E6V9G9 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: 25ED0DCDFF11D22D	FASTA	551	61,712
	10 20 30 40 50 60 MKDFAALYRE LDASTSNLVK QAALQRYLRN ADAADAAWAV YFLAGGKPRQ LVPTKLLRLL 70 80 90 100 110 120 AQEAAGLPEW LFDESYDAVG DLAETIALLL PPPSEVHDLG LAAWVEQHLL PLREAAKTAP 130 140 150 160 170 180 EELADRLRAQ WRQLAAEERL VYFKLITGAF RVGVSKLQVT QALAAVGGID AKRVAQRLMG 190 200 210 220 230 240 YTHIGARPRA GDYATLIAPE SDSEQVQKTS GQPYPFFLAH PFNIPLEQFD AVLGPPADWI 250 260 270 280 290 300 VEWKWDGIRA QLVKRAGVVW LWSRGEELVT DRFPELAVLG EALPDGTVLD GEIAVWREDK 310 320 330 340 350 360 VQPFAELQKR IGRKTLGAKL LRDIPVVLLA YDILEWEGRD LRTEPQSARR MLLDDLVTRM 370 380 390 400 410 420 QHPSLLPSPM LTGLDWSDLA RQREAARTMG VEGMMLKRRD SQYGVGRTKD VGVWWKWKID 430 440 450 460 470 480 PLSIDAVLIY AQRGHGRRAS LFSDYTFAVW DGPPEQEDRK LVPFAKAYSG LTDAEMARVD 490 500 510 520 530 540 AIIRKTTVES FGPVKSVKPT LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD 550 TLQTLAALLP S

References

[1]

"Complete sequence of Variovorax paradoxus EPS." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T. Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: EPS EMBL ADU39653.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002417 Genomic DNA. Translation: ADU39653.1.
RefSeq	YP_004157764.1. NC_014931.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADU39653; ADU39653; Varpa_5498.
GeneID	10132371.
KEGG	vpe:Varpa_5498.
PATRIC	45397165. VBIVarPar156291_5569.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	VPAR595537:GHGJ-5562-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6V9G9_VARPE

Accession

Primary (citable) accession number: E6V9G9

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	May 29, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)