Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

E6V9G9 (E6V9G9_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Varpa_5498 EMBL ADU39653.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU39653.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length551 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
E6V9G9 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 25ED0DCDFF11D22D

FASTA55161,712
        10         20         30         40         50         60 
MKDFAALYRE LDASTSNLVK QAALQRYLRN ADAADAAWAV YFLAGGKPRQ LVPTKLLRLL 

        70         80         90        100        110        120 
AQEAAGLPEW LFDESYDAVG DLAETIALLL PPPSEVHDLG LAAWVEQHLL PLREAAKTAP 

       130        140        150        160        170        180 
EELADRLRAQ WRQLAAEERL VYFKLITGAF RVGVSKLQVT QALAAVGGID AKRVAQRLMG 

       190        200        210        220        230        240 
YTHIGARPRA GDYATLIAPE SDSEQVQKTS GQPYPFFLAH PFNIPLEQFD AVLGPPADWI 

       250        260        270        280        290        300 
VEWKWDGIRA QLVKRAGVVW LWSRGEELVT DRFPELAVLG EALPDGTVLD GEIAVWREDK 

       310        320        330        340        350        360 
VQPFAELQKR IGRKTLGAKL LRDIPVVLLA YDILEWEGRD LRTEPQSARR MLLDDLVTRM 

       370        380        390        400        410        420 
QHPSLLPSPM LTGLDWSDLA RQREAARTMG VEGMMLKRRD SQYGVGRTKD VGVWWKWKID 

       430        440        450        460        470        480 
PLSIDAVLIY AQRGHGRRAS LFSDYTFAVW DGPPEQEDRK LVPFAKAYSG LTDAEMARVD 

       490        500        510        520        530        540 
AIIRKTTVES FGPVKSVKPT LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD 

       550 
TLQTLAALLP S 

« Hide

References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU39653.1.
RefSeqYP_004157764.1. NC_014931.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU39653; ADU39653; Varpa_5498.
GeneID10132371.
KEGGvpe:Varpa_5498.
PATRIC45397165. VBIVarPar156291_5569.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.
OMARVWLWSR.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-5562-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6V9G9_VARPE
AccessionPrimary (citable) accession number: E6V9G9
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 14, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)