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E6V9G9

- E6V9G9_VARPE

UniProt

E6V9G9 - E6V9G9_VARPE

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_5498

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVPAR595537:GHGJ-5562-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Varpa_5498Imported
    OrganismiVariovorax paradoxus (strain EPS)Imported
    Taxonomic identifieri595537 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000008917: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6V9G9-1 [UniParc]FASTAAdd to Basket

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    MKDFAALYRE LDASTSNLVK QAALQRYLRN ADAADAAWAV YFLAGGKPRQ    50
    LVPTKLLRLL AQEAAGLPEW LFDESYDAVG DLAETIALLL PPPSEVHDLG 100
    LAAWVEQHLL PLREAAKTAP EELADRLRAQ WRQLAAEERL VYFKLITGAF 150
    RVGVSKLQVT QALAAVGGID AKRVAQRLMG YTHIGARPRA GDYATLIAPE 200
    SDSEQVQKTS GQPYPFFLAH PFNIPLEQFD AVLGPPADWI VEWKWDGIRA 250
    QLVKRAGVVW LWSRGEELVT DRFPELAVLG EALPDGTVLD GEIAVWREDK 300
    VQPFAELQKR IGRKTLGAKL LRDIPVVLLA YDILEWEGRD LRTEPQSARR 350
    MLLDDLVTRM QHPSLLPSPM LTGLDWSDLA RQREAARTMG VEGMMLKRRD 400
    SQYGVGRTKD VGVWWKWKID PLSIDAVLIY AQRGHGRRAS LFSDYTFAVW 450
    DGPPEQEDRK LVPFAKAYSG LTDAEMARVD AIIRKTTVES FGPVKSVKPT 500
    LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD TLQTLAALLP 550
    S 551
    Length:551
    Mass (Da):61,712
    Last modified:March 8, 2011 - v1
    Checksum:i25ED0DCDFF11D22D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU39653.1.
    RefSeqiWP_013543854.1. NC_014931.1.
    YP_004157764.1. NC_014931.1.

    Genome annotation databases

    EnsemblBacteriaiADU39653; ADU39653; Varpa_5498.
    GeneIDi10132371.
    KEGGivpe:Varpa_5498.
    PATRICi45397165. VBIVarPar156291_5569.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU39653.1 .
    RefSeqi WP_013543854.1. NC_014931.1.
    YP_004157764.1. NC_014931.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU39653 ; ADU39653 ; Varpa_5498 .
    GeneIDi 10132371.
    KEGGi vpe:Varpa_5498.
    PATRICi 45397165. VBIVarPar156291_5569.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.

    Enzyme and pathway databases

    BioCyci VPAR595537:GHGJ-5562-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Variovorax paradoxus EPS."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EPSImported.

    Entry informationi

    Entry nameiE6V9G9_VARPE
    AccessioniPrimary (citable) accession number: E6V9G9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3