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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_2997

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3024-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_2997Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE6V6Y0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V6Y0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATQIAPVEP MLAKIAEEVP PEGEFLYEPK WDGFRAIVFR DAAGVRIQSR
60 70 80 90 100
DLKPLDRYFP ELHAALYDGL PARCVLDGEI VIAGAAGLDF DALLQRVHPA
110 120 130 140 150
ASRVERLASE TPASFVAFDL LALEGRDLQH RSQSERRMLL EAFMADVGPP
160 170 180 190 200
IHLTPMTESR AVALQWLDHF EGAGLDGVVA KRADGAYLPG ERAMFKVKHV
210 220 230 240 250
RTADCVLAGL RWHKSGDDAV GSLLLGLWDA QGVLQHVGAT SSFDMATRRS
260 270 280 290 300
LARELAPLMR NAGRGHPWIG SDDAATAALQ ARQRAPGART RWNSGKDLSW
310 320 330 340 350
VPLRPERVCE VRYDHLQGDR FRHGAIFVRW RPDKPPAACT YAQCEVTPPY
360
ELARVFAAER TRSASA
Length:366
Mass (Da):40,400
Last modified:March 8, 2011 - v1
Checksum:iA43BB95CE5BF73A2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37184.1.
RefSeqiWP_013541412.1. NC_014931.1.
YP_004155295.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU37184; ADU37184; Varpa_2997.
GeneIDi10129832.
KEGGivpe:Varpa_2997.
PATRICi45392003. VBIVarPar156291_3036.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37184.1.
RefSeqiWP_013541412.1. NC_014931.1.
YP_004155295.1. NC_014931.1.

3D structure databases

ProteinModelPortaliE6V6Y0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU37184; ADU37184; Varpa_2997.
GeneIDi10129832.
KEGGivpe:Varpa_2997.
PATRICi45392003. VBIVarPar156291_3036.

Phylogenomic databases

HOGENOMiHOG000222508.
OMAiHERTADC.

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3024-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPSImported.

Entry informationi

Entry nameiE6V6Y0_VARPE
AccessioniPrimary (citable) accession number: E6V6Y0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: March 4, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.