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E6V6Y0 (E6V6Y0_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Varpa_2997 EMBL ADU37184.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU37184.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length366 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
E6V6Y0 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: A43BB95CE5BF73A2

FASTA36640,400
        10         20         30         40         50         60 
MATQIAPVEP MLAKIAEEVP PEGEFLYEPK WDGFRAIVFR DAAGVRIQSR DLKPLDRYFP 

        70         80         90        100        110        120 
ELHAALYDGL PARCVLDGEI VIAGAAGLDF DALLQRVHPA ASRVERLASE TPASFVAFDL 

       130        140        150        160        170        180 
LALEGRDLQH RSQSERRMLL EAFMADVGPP IHLTPMTESR AVALQWLDHF EGAGLDGVVA 

       190        200        210        220        230        240 
KRADGAYLPG ERAMFKVKHV RTADCVLAGL RWHKSGDDAV GSLLLGLWDA QGVLQHVGAT 

       250        260        270        280        290        300 
SSFDMATRRS LARELAPLMR NAGRGHPWIG SDDAATAALQ ARQRAPGART RWNSGKDLSW 

       310        320        330        340        350        360 
VPLRPERVCE VRYDHLQGDR FRHGAIFVRW RPDKPPAACT YAQCEVTPPY ELARVFAAER 


TRSASA 

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References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU37184.1.
RefSeqYP_004155295.1. NC_014931.1.

3D structure databases

ProteinModelPortalE6V6Y0.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU37184; ADU37184; Varpa_2997.
GeneID10129832.
KEGGvpe:Varpa_2997.
PATRIC45392003. VBIVarPar156291_3036.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222508.
KOK01971.
OMAHERTADC.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-3024-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6V6Y0_VARPE
AccessionPrimary (citable) accession number: E6V6Y0
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 14, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)