Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

E6V6Y0

- E6V6Y0_VARPE

UniProt

E6V6Y0 - E6V6Y0_VARPE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_2997

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3024-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_2997Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE6V6Y0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V6Y0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATQIAPVEP MLAKIAEEVP PEGEFLYEPK WDGFRAIVFR DAAGVRIQSR
60 70 80 90 100
DLKPLDRYFP ELHAALYDGL PARCVLDGEI VIAGAAGLDF DALLQRVHPA
110 120 130 140 150
ASRVERLASE TPASFVAFDL LALEGRDLQH RSQSERRMLL EAFMADVGPP
160 170 180 190 200
IHLTPMTESR AVALQWLDHF EGAGLDGVVA KRADGAYLPG ERAMFKVKHV
210 220 230 240 250
RTADCVLAGL RWHKSGDDAV GSLLLGLWDA QGVLQHVGAT SSFDMATRRS
260 270 280 290 300
LARELAPLMR NAGRGHPWIG SDDAATAALQ ARQRAPGART RWNSGKDLSW
310 320 330 340 350
VPLRPERVCE VRYDHLQGDR FRHGAIFVRW RPDKPPAACT YAQCEVTPPY
360
ELARVFAAER TRSASA
Length:366
Mass (Da):40,400
Last modified:March 8, 2011 - v1
Checksum:iA43BB95CE5BF73A2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37184.1.
RefSeqiWP_013541412.1. NC_014931.1.
YP_004155295.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU37184; ADU37184; Varpa_2997.
GeneIDi10129832.
KEGGivpe:Varpa_2997.
PATRICi45392003. VBIVarPar156291_3036.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37184.1 .
RefSeqi WP_013541412.1. NC_014931.1.
YP_004155295.1. NC_014931.1.

3D structure databases

ProteinModelPortali E6V6Y0.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU37184 ; ADU37184 ; Varpa_2997 .
GeneIDi 10129832.
KEGGi vpe:Varpa_2997.
PATRICi 45392003. VBIVarPar156291_3036.

Phylogenomic databases

HOGENOMi HOG000222508.
KOi K01971.
OMAi HERTADC.

Enzyme and pathway databases

BioCyci VPAR595537:GHGJ-3024-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPSImported.

Entry informationi

Entry nameiE6V6Y0_VARPE
AccessioniPrimary (citable) accession number: E6V6Y0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: October 1, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3