Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

E6V6Y0

- E6V6Y0_VARPE

UniProt

E6V6Y0 - E6V6Y0_VARPE

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_2997

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVPAR595537:GHGJ-3024-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Varpa_2997Imported
    OrganismiVariovorax paradoxus (strain EPS)Imported
    Taxonomic identifieri595537 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000008917: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliE6V6Y0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222508.
    KOiK01971.
    OMAiHERTADC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6V6Y0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATQIAPVEP MLAKIAEEVP PEGEFLYEPK WDGFRAIVFR DAAGVRIQSR    50
    DLKPLDRYFP ELHAALYDGL PARCVLDGEI VIAGAAGLDF DALLQRVHPA 100
    ASRVERLASE TPASFVAFDL LALEGRDLQH RSQSERRMLL EAFMADVGPP 150
    IHLTPMTESR AVALQWLDHF EGAGLDGVVA KRADGAYLPG ERAMFKVKHV 200
    RTADCVLAGL RWHKSGDDAV GSLLLGLWDA QGVLQHVGAT SSFDMATRRS 250
    LARELAPLMR NAGRGHPWIG SDDAATAALQ ARQRAPGART RWNSGKDLSW 300
    VPLRPERVCE VRYDHLQGDR FRHGAIFVRW RPDKPPAACT YAQCEVTPPY 350
    ELARVFAAER TRSASA 366
    Length:366
    Mass (Da):40,400
    Last modified:March 8, 2011 - v1
    Checksum:iA43BB95CE5BF73A2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU37184.1.
    RefSeqiWP_013541412.1. NC_014931.1.
    YP_004155295.1. NC_014931.1.

    Genome annotation databases

    EnsemblBacteriaiADU37184; ADU37184; Varpa_2997.
    GeneIDi10129832.
    KEGGivpe:Varpa_2997.
    PATRICi45392003. VBIVarPar156291_3036.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU37184.1 .
    RefSeqi WP_013541412.1. NC_014931.1.
    YP_004155295.1. NC_014931.1.

    3D structure databases

    ProteinModelPortali E6V6Y0.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU37184 ; ADU37184 ; Varpa_2997 .
    GeneIDi 10129832.
    KEGGi vpe:Varpa_2997.
    PATRICi 45392003. VBIVarPar156291_3036.

    Phylogenomic databases

    HOGENOMi HOG000222508.
    KOi K01971.
    OMAi HERTADC.

    Enzyme and pathway databases

    BioCyci VPAR595537:GHGJ-3024-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Variovorax paradoxus EPS."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EPSImported.

    Entry informationi

    Entry nameiE6V6Y0_VARPE
    AccessioniPrimary (citable) accession number: E6V6Y0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3