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E6V5E7 (E6V5E7_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Varpa_0532 EMBL ADU34753.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU34753.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length869 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADU34753.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E6V5E7 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 82239A995EB614D1

FASTA86995,245
        10         20         30         40         50         60 
MGTTRTASTA RKALSRYHGK RDFSRTPEPK EGGRAGQGVL SFVIQKHHAS RLHYDFRLEL 

        70         80         90        100        110        120 
DGTLKSWAVP KGPCLDPTVK RMAVHVEDHP ISYADFEGTI PPKQYGAGTV IVWDRGDWLP 

       130        140        150        160        170        180 
EGGSEADARK ALAAGKLKFE LRGEKLKGHW TLVRMRGKGD EKQEPWLLIK ERDDAARDLA 

       190        200        210        220        230        240 
DYDVLEEQPA SVLTGRGLDE VDSPPKKAAP AKKAAAKKPE KKAAKKEVKK EVKKKAALPA 

       250        260        270        280        290        300 
TLQPQLAVLA ASPPSSPDDW LYELKFDGYR LLARIDKGKV RCFTRNGHDW TDKLPVIAKA 

       310        320        330        340        350        360 
LAKLPTDSAW LDGEITVEGG NGAPDFQALQ NAFDRGATSS IVYWLFDAPF LDGQDLRDEP 

       370        380        390        400        410        420 
VEERRAHLAR LLGKRPPATL RLSEAFDASP RDLLASSARI GFEGIVGKRK GSPYVSRRSA 

       430        440        450        460        470        480 
DWIKLKNQQR QEFVIGGYTA PKGSRSGFGA LLLGVHDDKG RLRYCGNVGT GFNADRLADI 

       490        500        510        520        530        540 
KARLDRLATD DCPFKPMPDG ANAKAQWVKP TLVAEVSFGE WTREDRVRQA VFQGLRTDKP 

       550        560        570        580        590        600 
ARGIVRERAA PSETSPETST EASTDTPAKK QGARKSMALK ITHADRVIDA KSGITKGELA 

       610        620        630        640        650        660 
AYYDAVGTLM LPHLRGRPVS LVRAPDGVGG ELFFQKHIQN REIPGVNLLD PALDPGHEPL 

       670        680        690        700        710        720 
LQIDSKTGLI GAAQMNVIEL HTWNATSRAI DRPDRMTFDL DPGEGVGWPQ IQEATLLVRT 

       730        740        750        760        770        780 
LLDELGLPSF LKTSGGKGMH VVVPIRRQYG WDEVKGFSQA VVVHLAKTIP DRFVAKSGPR 

       790        800        810        820        830        840 
NRVGKVFVDY LRNGFGATTV SAWSARSRPG LGVSVPVAWE ELPALTGAAQ WTVANVAERL 

       850        860 
ATGNKPWAAM ERSRKGIAAA MKMLDYKPA 

« Hide

References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU34753.1.
RefSeqYP_004152864.1. NC_014931.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU34753; ADU34753; Varpa_0532.
GeneID10127345.
KEGGvpe:Varpa_0532.
PATRIC45386973. VBIVarPar156291_0549.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-538-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6V5E7_VARPE
AccessionPrimary (citable) accession number: E6V5E7
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 14, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)