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E6V5E7

- E6V5E7_VARPE

UniProt

E6V5E7 - E6V5E7_VARPE

Protein
Submitted name:

DNA ligase D

Gene

Varpa_0532

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVPAR595537:GHGJ-538-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Varpa_0532Imported
    OrganismiVariovorax paradoxus (strain EPS)Imported
    Taxonomic identifieri595537 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000008917: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6V5E7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGTTRTASTA RKALSRYHGK RDFSRTPEPK EGGRAGQGVL SFVIQKHHAS    50
    RLHYDFRLEL DGTLKSWAVP KGPCLDPTVK RMAVHVEDHP ISYADFEGTI 100
    PPKQYGAGTV IVWDRGDWLP EGGSEADARK ALAAGKLKFE LRGEKLKGHW 150
    TLVRMRGKGD EKQEPWLLIK ERDDAARDLA DYDVLEEQPA SVLTGRGLDE 200
    VDSPPKKAAP AKKAAAKKPE KKAAKKEVKK EVKKKAALPA TLQPQLAVLA 250
    ASPPSSPDDW LYELKFDGYR LLARIDKGKV RCFTRNGHDW TDKLPVIAKA 300
    LAKLPTDSAW LDGEITVEGG NGAPDFQALQ NAFDRGATSS IVYWLFDAPF 350
    LDGQDLRDEP VEERRAHLAR LLGKRPPATL RLSEAFDASP RDLLASSARI 400
    GFEGIVGKRK GSPYVSRRSA DWIKLKNQQR QEFVIGGYTA PKGSRSGFGA 450
    LLLGVHDDKG RLRYCGNVGT GFNADRLADI KARLDRLATD DCPFKPMPDG 500
    ANAKAQWVKP TLVAEVSFGE WTREDRVRQA VFQGLRTDKP ARGIVRERAA 550
    PSETSPETST EASTDTPAKK QGARKSMALK ITHADRVIDA KSGITKGELA 600
    AYYDAVGTLM LPHLRGRPVS LVRAPDGVGG ELFFQKHIQN REIPGVNLLD 650
    PALDPGHEPL LQIDSKTGLI GAAQMNVIEL HTWNATSRAI DRPDRMTFDL 700
    DPGEGVGWPQ IQEATLLVRT LLDELGLPSF LKTSGGKGMH VVVPIRRQYG 750
    WDEVKGFSQA VVVHLAKTIP DRFVAKSGPR NRVGKVFVDY LRNGFGATTV 800
    SAWSARSRPG LGVSVPVAWE ELPALTGAAQ WTVANVAERL ATGNKPWAAM 850
    ERSRKGIAAA MKMLDYKPA 869
    Length:869
    Mass (Da):95,245
    Last modified:March 8, 2011 - v1
    Checksum:i82239A995EB614D1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU34753.1.
    RefSeqiWP_013538999.1. NC_014931.1.
    YP_004152864.1. NC_014931.1.

    Genome annotation databases

    EnsemblBacteriaiADU34753; ADU34753; Varpa_0532.
    GeneIDi10127345.
    KEGGivpe:Varpa_0532.
    PATRICi45386973. VBIVarPar156291_0549.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU34753.1 .
    RefSeqi WP_013538999.1. NC_014931.1.
    YP_004152864.1. NC_014931.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU34753 ; ADU34753 ; Varpa_0532 .
    GeneIDi 10127345.
    KEGGi vpe:Varpa_0532.
    PATRICi 45386973. VBIVarPar156291_0549.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.

    Enzyme and pathway databases

    BioCyci VPAR595537:GHGJ-538-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Variovorax paradoxus EPS."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EPSImported.

    Entry informationi

    Entry nameiE6V5E7_VARPE
    AccessioniPrimary (citable) accession number: E6V5E7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3