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E6V5E7

- E6V5E7_VARPE

UniProt

E6V5E7 - E6V5E7_VARPE

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Protein
Submitted name: DNA ligase D
Gene
Varpa_0532
Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-538-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Varpa_0532Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V5E7-1 [UniParc]FASTAAdd to Basket

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MGTTRTASTA RKALSRYHGK RDFSRTPEPK EGGRAGQGVL SFVIQKHHAS    50
RLHYDFRLEL DGTLKSWAVP KGPCLDPTVK RMAVHVEDHP ISYADFEGTI 100
PPKQYGAGTV IVWDRGDWLP EGGSEADARK ALAAGKLKFE LRGEKLKGHW 150
TLVRMRGKGD EKQEPWLLIK ERDDAARDLA DYDVLEEQPA SVLTGRGLDE 200
VDSPPKKAAP AKKAAAKKPE KKAAKKEVKK EVKKKAALPA TLQPQLAVLA 250
ASPPSSPDDW LYELKFDGYR LLARIDKGKV RCFTRNGHDW TDKLPVIAKA 300
LAKLPTDSAW LDGEITVEGG NGAPDFQALQ NAFDRGATSS IVYWLFDAPF 350
LDGQDLRDEP VEERRAHLAR LLGKRPPATL RLSEAFDASP RDLLASSARI 400
GFEGIVGKRK GSPYVSRRSA DWIKLKNQQR QEFVIGGYTA PKGSRSGFGA 450
LLLGVHDDKG RLRYCGNVGT GFNADRLADI KARLDRLATD DCPFKPMPDG 500
ANAKAQWVKP TLVAEVSFGE WTREDRVRQA VFQGLRTDKP ARGIVRERAA 550
PSETSPETST EASTDTPAKK QGARKSMALK ITHADRVIDA KSGITKGELA 600
AYYDAVGTLM LPHLRGRPVS LVRAPDGVGG ELFFQKHIQN REIPGVNLLD 650
PALDPGHEPL LQIDSKTGLI GAAQMNVIEL HTWNATSRAI DRPDRMTFDL 700
DPGEGVGWPQ IQEATLLVRT LLDELGLPSF LKTSGGKGMH VVVPIRRQYG 750
WDEVKGFSQA VVVHLAKTIP DRFVAKSGPR NRVGKVFVDY LRNGFGATTV 800
SAWSARSRPG LGVSVPVAWE ELPALTGAAQ WTVANVAERL ATGNKPWAAM 850
ERSRKGIAAA MKMLDYKPA 869
Length:869
Mass (Da):95,245
Last modified:March 8, 2011 - v1
Checksum:i82239A995EB614D1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU34753.1.
RefSeqiWP_013538999.1. NC_014931.1.
YP_004152864.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU34753; ADU34753; Varpa_0532.
GeneIDi10127345.
KEGGivpe:Varpa_0532.
PATRICi45386973. VBIVarPar156291_0549.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU34753.1 .
RefSeqi WP_013538999.1. NC_014931.1.
YP_004152864.1. NC_014931.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU34753 ; ADU34753 ; Varpa_0532 .
GeneIDi 10127345.
KEGGi vpe:Varpa_0532.
PATRICi 45386973. VBIVarPar156291_0549.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.

Enzyme and pathway databases

BioCyci VPAR595537:GHGJ-538-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPS.

Entry informationi

Entry nameiE6V5E7_VARPE
AccessioniPrimary (citable) accession number: E6V5E7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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