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E6V4U6 (E6V4U6_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Varpa_2840 EMBL ADU37032.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU37032.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length284 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ADU37032.1
   Molecular functionLigase EMBL ADU37032.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL ADU37032.1
Chain24 – 284261 Potential EMBL ADU37032.1
PRO_5000674879

Sequences

Sequence LengthMass (Da)Tools
E6V4U6 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 0B91427C3A30EAB6

FASTA28431,533
        10         20         30         40         50         60 
MLNRRFLLLA TLGLALVQPA LARNAAPSLM LADVYRPSMS LADYWVSEKY DGVRGYWDGK 

        70         80         90        100        110        120 
QLWTRGGEPV AAPAWFIASL PKQQLDGELW AGRGRFSHAV STARSQTPND VAWREMRFMV 

       130        140        150        160        170        180 
FDMPAQPGDF TARLAALRKL LPITDAPWVV LVPQERATTH AELQALLDKT VKMGGEGLML 

       190        200        210        220        230        240 
HRGSSPYRGE RNNDLLKVKP YDDAEARVVG HVTGKGRNSH RLGALVVETP EGKRFKLGSG 

       250        260        270        280 
LTDAERENPP AIGAWVTYRF NGTNASGLPR FARFMRVRED APHS 

« Hide

References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU37032.1.
RefSeqYP_004155143.1. NC_014931.1.

3D structure databases

ProteinModelPortalE6V4U6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU37032; ADU37032; Varpa_2840.
GeneID10129675.
KEGGvpe:Varpa_2840.
PATRIC45391688. VBIVarPar156291_2879.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-2867-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE6V4U6_VARPE
AccessionPrimary (citable) accession number: E6V4U6
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: June 11, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)