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E6V4U6

- E6V4U6_VARPE

UniProt

E6V4U6 - E6V4U6_VARPE

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Varpa_2840
Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-2867-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_2840Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PredictedImported
Add
BLAST
Chaini24 – 284261 PredictedImported
PRO_5000674879Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliE6V4U6.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

E6V4U6-1 [UniParc]FASTAAdd to Basket

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MLNRRFLLLA TLGLALVQPA LARNAAPSLM LADVYRPSMS LADYWVSEKY    50
DGVRGYWDGK QLWTRGGEPV AAPAWFIASL PKQQLDGELW AGRGRFSHAV 100
STARSQTPND VAWREMRFMV FDMPAQPGDF TARLAALRKL LPITDAPWVV 150
LVPQERATTH AELQALLDKT VKMGGEGLML HRGSSPYRGE RNNDLLKVKP 200
YDDAEARVVG HVTGKGRNSH RLGALVVETP EGKRFKLGSG LTDAERENPP 250
AIGAWVTYRF NGTNASGLPR FARFMRVRED APHS 284
Length:284
Mass (Da):31,533
Last modified:March 8, 2011 - v1
Checksum:i0B91427C3A30EAB6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU37032.1.
RefSeqiWP_013541260.1. NC_014931.1.
YP_004155143.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU37032; ADU37032; Varpa_2840.
GeneIDi10129675.
KEGGivpe:Varpa_2840.
PATRICi45391688. VBIVarPar156291_2879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU37032.1 .
RefSeqi WP_013541260.1. NC_014931.1.
YP_004155143.1. NC_014931.1.

3D structure databases

ProteinModelPortali E6V4U6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU37032 ; ADU37032 ; Varpa_2840 .
GeneIDi 10129675.
KEGGi vpe:Varpa_2840.
PATRICi 45391688. VBIVarPar156291_2879.

Phylogenomic databases

HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.

Enzyme and pathway databases

BioCyci VPAR595537:GHGJ-2867-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPS.

Entry informationi

Entry nameiE6V4U6_VARPE
AccessioniPrimary (citable) accession number: E6V4U6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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