Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_2840

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-2867-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Varpa_2840Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PotentialImportedAdd
BLAST
Chaini24 – 284261 PotentialImportedPRO_5000674879Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi595537.Varpa_2840.

Structurei

3D structure databases

ProteinModelPortaliE6V4U6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

E6V4U6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNRRFLLLA TLGLALVQPA LARNAAPSLM LADVYRPSMS LADYWVSEKY
60 70 80 90 100
DGVRGYWDGK QLWTRGGEPV AAPAWFIASL PKQQLDGELW AGRGRFSHAV
110 120 130 140 150
STARSQTPND VAWREMRFMV FDMPAQPGDF TARLAALRKL LPITDAPWVV
160 170 180 190 200
LVPQERATTH AELQALLDKT VKMGGEGLML HRGSSPYRGE RNNDLLKVKP
210 220 230 240 250
YDDAEARVVG HVTGKGRNSH RLGALVVETP EGKRFKLGSG LTDAERENPP
260 270 280
AIGAWVTYRF NGTNASGLPR FARFMRVRED APHS
Length:284
Mass (Da):31,533
Last modified:March 8, 2011 - v1
Checksum:i0B91427C3A30EAB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37032.1.
RefSeqiWP_013541260.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU37032; ADU37032; Varpa_2840.
KEGGivpe:Varpa_2840.
PATRICi45391688. VBIVarPar156291_2879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37032.1.
RefSeqiWP_013541260.1. NC_014931.1.

3D structure databases

ProteinModelPortaliE6V4U6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi595537.Varpa_2840.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU37032; ADU37032; Varpa_2840.
KEGGivpe:Varpa_2840.
PATRICi45391688. VBIVarPar156291_2879.

Phylogenomic databases

HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-2867-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPSImported.

Entry informationi

Entry nameiE6V4U6_VARPE
AccessioniPrimary (citable) accession number: E6V4U6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: July 22, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.