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E6V4U6

- E6V4U6_VARPE

UniProt

E6V4U6 - E6V4U6_VARPE

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Varpa_2840

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVPAR595537:GHGJ-2867-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Varpa_2840Imported
    OrganismiVariovorax paradoxus (strain EPS)Imported
    Taxonomic identifieri595537 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000008917: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2323 PotentialImportedAdd
    BLAST
    Chaini24 – 284261 PotentialImportedPRO_5000674879Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliE6V4U6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    E6V4U6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLNRRFLLLA TLGLALVQPA LARNAAPSLM LADVYRPSMS LADYWVSEKY    50
    DGVRGYWDGK QLWTRGGEPV AAPAWFIASL PKQQLDGELW AGRGRFSHAV 100
    STARSQTPND VAWREMRFMV FDMPAQPGDF TARLAALRKL LPITDAPWVV 150
    LVPQERATTH AELQALLDKT VKMGGEGLML HRGSSPYRGE RNNDLLKVKP 200
    YDDAEARVVG HVTGKGRNSH RLGALVVETP EGKRFKLGSG LTDAERENPP 250
    AIGAWVTYRF NGTNASGLPR FARFMRVRED APHS 284
    Length:284
    Mass (Da):31,533
    Last modified:March 8, 2011 - v1
    Checksum:i0B91427C3A30EAB6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU37032.1.
    RefSeqiWP_013541260.1. NC_014931.1.
    YP_004155143.1. NC_014931.1.

    Genome annotation databases

    EnsemblBacteriaiADU37032; ADU37032; Varpa_2840.
    GeneIDi10129675.
    KEGGivpe:Varpa_2840.
    PATRICi45391688. VBIVarPar156291_2879.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002417 Genomic DNA. Translation: ADU37032.1 .
    RefSeqi WP_013541260.1. NC_014931.1.
    YP_004155143.1. NC_014931.1.

    3D structure databases

    ProteinModelPortali E6V4U6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU37032 ; ADU37032 ; Varpa_2840 .
    GeneIDi 10129675.
    KEGGi vpe:Varpa_2840.
    PATRICi 45391688. VBIVarPar156291_2879.

    Phylogenomic databases

    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.

    Enzyme and pathway databases

    BioCyci VPAR595537:GHGJ-2867-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Variovorax paradoxus EPS."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EPSImported.

    Entry informationi

    Entry nameiE6V4U6_VARPE
    AccessioniPrimary (citable) accession number: E6V4U6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3