E6V374 (E6V374_VARPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cytochrome c oxidase, subunit I EMBL ADU39213.1

Gene names

Ordered Locus Names:

Varpa_5053 EMBL ADU39213.1

Organism

Variovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU39213.1

Taxonomic identifier

595537 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	546 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Ontologies

Keywords
Biological process	Electron transport Respiratory chain RuleBase RU000370 Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU000370
Ligand	Heme RuleBase RU000370 Iron Metal-binding
Molecular function	Oxidoreductase RuleBase RU000370
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	aerobic respiration Inferred from electronic annotation. Source: InterPro electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: InterPro respiratory chain Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	copper ion binding Inferred from electronic annotation. Source: InterPro cytochrome-c oxidase activity Inferred from electronic annotation. Source: InterPro electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro iron ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E6V374 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: 9D614B0C6A8679E4	FASTA	546	60,850
	10 20 30 40 50 60 MSAVLDPHGH AHGDHAHDGH DEHHAAPTGW RRWVFATNHK DIGTLYLLFS FTMLMVGGIL 70 80 90 100 110 120 ALLIRAELFQ PGLQLVNPEL FNQFTTMHGL IMVFGAIMPA FVGFANWMIP LQVGASDMAF 130 140 150 160 170 180 ARMNNFSFWL LIPAALMLVG SFFMPGGAPA AGWTLYAPLT LQMGPSMDAG IFAMHIMGAS 190 200 210 220 230 240 SIMGSINIIV TILNMRAPGM TLMKMPMFCW TWLITAYLLI AVMPVLAGAI TMTLTDRHFG 250 260 270 280 290 300 TSFFNPAGGG DPVMYQHIFW FFGHPEVYIM ILPAFGIISQ VVPAFARKKL FGYASMVYAT 310 320 330 340 350 360 SSIAILSFIV WAHHMFTTGM PLTGQLFFMY ATMLIAVPTA VKIFNWIATM WQGSMTFETP 370 380 390 400 410 420 MLFAVGFIFV FTMGGFTGLI LAVAPIDTQL QDTYYVVAHF HYVLVAGSLF AMFSGFYYWV 430 440 450 460 470 480 PKWTGVMYNE TRGKVHFWWS LISFNVTFFP MHFLGLAGMP RRYADYPMQF ADFNALASVG 490 500 510 520 530 540 AFFFGFAQVY FFLFVVLPTM RGKGEKASQK PWEAAEGLEW EVPSPAPFHT FENPPKLDAT ATKVIG

References

[1]

"Complete sequence of Variovorax paradoxus EPS." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T. Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: EPS EMBL ADU39213.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002417 Genomic DNA. Translation: ADU39213.1.
RefSeq	YP_004157324.1. NC_014931.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADU39213; ADU39213; Varpa_5053.
GeneID	10131918.
KEGG	vpe:Varpa_5053.
PATRIC	45396237. VBIVarPar156291_5115.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000085274.
KO	K02274.
OMA	TVTMVLT.
Family and domain databases
Gene3D	1.20.210.10. 1 hit.
InterPro	IPR000883. Cyt_c_Oxase_su1. IPR023615. Cyt_c_Oxase_su1_BS. IPR023616. Cyt_c_Oxase_su1_dom. IPR014241. Cyt_c_oxidase_su1_bac. [Graphical view]
PANTHER	PTHR10422. PTHR10422. 1 hit.
Pfam	PF00115. COX1. 1 hit. [Graphical view]
PRINTS	PR01165. CYCOXIDASEI.
SUPFAM	SSF81442. COX1. 1 hit.
TIGRFAMs	TIGR02891. CtaD_CoxA. 1 hit.
PROSITE	PS50855. COX1. 1 hit. PS00077. COX1_CUB. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6V374_VARPE

Accession

Primary (citable) accession number: E6V374

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)