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E6V301

- E6V301_VARPE

UniProt

E6V301 - E6V301_VARPE

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Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene
Varpa_3886
Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3923-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Varpa_3886Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE6V301.

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.
OMAiFECAGDP.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V301-1 [UniParc]FASTAAdd to Basket

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MAAERIRARY LIETPVDPAA VAEVMAGEQS CGTFTRVEGE TDALRERARA    50
TVEAITELEP APSPSLPNAL LERKGTRGPW RRAHVDISFP VANIGANLPT 100
LAATVSGNLY DLGEVTGLRL ESLHVPAAYR AQFEMPRIGI AGTRRATGVA 150
SGALVGTIIK PNVGLSAAET ATLVARLCAA GVDFIKDDEV CADPAHAPLA 200
ERVPAVMAVV RAHQERTGKH VMVAFNITDE TDAMKRHADL VEREGGSCVM 250
ASLNWCGHSG IQTLRRHTGL ALHGHRNGYG ALSRHPLLGI SFQAYQTLWR 300
LAGVDHMHVH GLQGKFSQPD SEVIESARDC FTPLTDAADD RVMPAFSSGQ 350
WAGTVPATWA AIGSDDLLFM AGGGILAHPD GAEAGVTSIR QAWSAARAGT 400
ALQDAAKHAS ELARALAFFG KP 422
Length:422
Mass (Da):44,716
Last modified:March 8, 2011 - v1
Checksum:iE2792261A02DF45F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU38067.1.
RefSeqiYP_004156178.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU38067; ADU38067; Varpa_3886.
GeneIDi10130731.
KEGGivpe:Varpa_3886.
PATRICi45393818. VBIVarPar156291_3931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002417 Genomic DNA. Translation: ADU38067.1 .
RefSeqi YP_004156178.1. NC_014931.1.

3D structure databases

ProteinModelPortali E6V301.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU38067 ; ADU38067 ; Varpa_3886 .
GeneIDi 10130731.
KEGGi vpe:Varpa_3886.
PATRICi 45393818. VBIVarPar156291_3931.

Phylogenomic databases

HOGENOMi HOG000230831.
KOi K01601.
OMAi FECAGDP.

Enzyme and pathway databases

BioCyci VPAR595537:GHGJ-3923-MONOMER.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPS.

Entry informationi

Entry nameiE6V301_VARPE
AccessioniPrimary (citable) accession number: E6V301
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: January 22, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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