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Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

Varpa_3886

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3923-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Varpa_3886Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
Proteomesi
  • UP000008917 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi595537.Varpa_3886.

Structurei

3D structure databases

ProteinModelPortaliE6V301.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 129115RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini139 – 419281RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiAHFPFIA.
OrthoDBiPOG091H2GZ2.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6V301-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAERIRARY LIETPVDPAA VAEVMAGEQS CGTFTRVEGE TDALRERARA
60 70 80 90 100
TVEAITELEP APSPSLPNAL LERKGTRGPW RRAHVDISFP VANIGANLPT
110 120 130 140 150
LAATVSGNLY DLGEVTGLRL ESLHVPAAYR AQFEMPRIGI AGTRRATGVA
160 170 180 190 200
SGALVGTIIK PNVGLSAAET ATLVARLCAA GVDFIKDDEV CADPAHAPLA
210 220 230 240 250
ERVPAVMAVV RAHQERTGKH VMVAFNITDE TDAMKRHADL VEREGGSCVM
260 270 280 290 300
ASLNWCGHSG IQTLRRHTGL ALHGHRNGYG ALSRHPLLGI SFQAYQTLWR
310 320 330 340 350
LAGVDHMHVH GLQGKFSQPD SEVIESARDC FTPLTDAADD RVMPAFSSGQ
360 370 380 390 400
WAGTVPATWA AIGSDDLLFM AGGGILAHPD GAEAGVTSIR QAWSAARAGT
410 420
ALQDAAKHAS ELARALAFFG KP
Length:422
Mass (Da):44,716
Last modified:March 8, 2011 - v1
Checksum:iE2792261A02DF45F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU38067.1.
RefSeqiWP_013542290.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU38067; ADU38067; Varpa_3886.
KEGGivpe:Varpa_3886.
PATRICi45393818. VBIVarPar156291_3931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU38067.1.
RefSeqiWP_013542290.1. NC_014931.1.

3D structure databases

ProteinModelPortaliE6V301.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi595537.Varpa_3886.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU38067; ADU38067; Varpa_3886.
KEGGivpe:Varpa_3886.
PATRICi45393818. VBIVarPar156291_3931.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiAHFPFIA.
OrthoDBiPOG091H2GZ2.

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3923-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiE6V301_VARPE
AccessioniPrimary (citable) accession number: E6V301
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 7, 2016
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.