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E6V301 (E6V301_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.39 EMBL ADU38067.1
Gene names
Ordered Locus Names:Varpa_3886 EMBL ADU38067.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU38067.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length422 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ADU38067.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E6V301 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: E2792261A02DF45F

FASTA42244,716
        10         20         30         40         50         60 
MAAERIRARY LIETPVDPAA VAEVMAGEQS CGTFTRVEGE TDALRERARA TVEAITELEP 

        70         80         90        100        110        120 
APSPSLPNAL LERKGTRGPW RRAHVDISFP VANIGANLPT LAATVSGNLY DLGEVTGLRL 

       130        140        150        160        170        180 
ESLHVPAAYR AQFEMPRIGI AGTRRATGVA SGALVGTIIK PNVGLSAAET ATLVARLCAA 

       190        200        210        220        230        240 
GVDFIKDDEV CADPAHAPLA ERVPAVMAVV RAHQERTGKH VMVAFNITDE TDAMKRHADL 

       250        260        270        280        290        300 
VEREGGSCVM ASLNWCGHSG IQTLRRHTGL ALHGHRNGYG ALSRHPLLGI SFQAYQTLWR 

       310        320        330        340        350        360 
LAGVDHMHVH GLQGKFSQPD SEVIESARDC FTPLTDAADD RVMPAFSSGQ WAGTVPATWA 

       370        380        390        400        410        420 
AIGSDDLLFM AGGGILAHPD GAEAGVTSIR QAWSAARAGT ALQDAAKHAS ELARALAFFG 


KP 

« Hide

References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU38067.1.
RefSeqYP_004156178.1. NC_014931.1.

3D structure databases

ProteinModelPortalE6V301.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU38067; ADU38067; Varpa_3886.
GeneID10130731.
KEGGvpe:Varpa_3886.
PATRIC45393818. VBIVarPar156291_3931.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230831.
KOK01601.
OMAFECAGDP.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-3923-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6V301_VARPE
AccessionPrimary (citable) accession number: E6V301
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: January 22, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)