E6V191 (E6V191_VARPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

Varpa_0233 EMBL ADU34455.1

Organism

Variovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU34455.1

Taxonomic identifier

595537 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	366 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADU34455.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E6V191 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: FD05A9EFAC4C17FA	FASTA	366	39,803
	10 20 30 40 50 60 MPRPILATVH TAALRNNLER VRRSALDARV WAVVKANAYG HGIERVYEGL RGADGFALLD 70 80 90 100 110 120 LAEAERVRAL GWRGPVLLLE GVFDARDLEL CSRLDLWHTV HCDEQIDMLA AHKTLKPQRV 130 140 150 160 170 180 FLKMNSGMNR LGFTPERFGS AWTRLNALTQ VDEISLMTHF SDADGARGIA HQLEAFERAT 190 200 210 220 230 240 RDLPGERSIA NSAATLRHAD QTRGDWVRPG IVLYGSAPDF PLHDAAHWQL QPTMTLSTQL 250 260 270 280 290 300 LSVQTLKAGD TIGYGSNFTA EGPLTIGVAA VGYADGYPRH CNTGTPVLVN GVRTRMVGRV 310 320 330 340 350 360 SMDMITVDLT PVPDAKFGAE VTLWGRSAST GAVLPIDEVA QAAGTVGYEL MCAVAQRVPF AAPTDE

References

[1]

"Complete sequence of Variovorax paradoxus EPS." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T. Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: EPS EMBL ADU34455.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002417 Genomic DNA. Translation: ADU34455.1.
RefSeq	YP_004152566.1. NC_014931.1.
3D structure databases
ProteinModelPortal	E6V191.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADU34455; ADU34455; Varpa_0233.
GeneID	10127046.
KEGG	vpe:Varpa_0233.
PATRIC	45386341. VBIVarPar156291_0235.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031446.
KO	K01775.
OMA	GQWQDIA.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6V191_VARPE

Accession

Primary (citable) accession number: E6V191

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	April 3, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)