Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

Varpa_3601

Organism
Variovorax paradoxus (strain EPS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3637-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Varpa_3601Imported
OrganismiVariovorax paradoxus (strain EPS)Imported
Taxonomic identifieri595537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000008917 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE6UYG1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.
OMAiHAAFTRN.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

E6UYG1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSSSSYLKY VDIGLEVDSE KNVVATYLIE KAVTSRLDGL AFLGSVAAES
60 70 80 90 100
STGTWTDVKT ATAGANLIAG KVFAYDPAVG IAKIAYPIDL FEPGNISQLL
110 120 130 140 150
TVIAGNAFGL ADVSKLKLMD ISLPKMYLAS YLGPRHGIKG VYERLKIEKN
160 170 180 190 200
IPIIGSIIKP KCGLTASEHA EICFDAWSGL ASEGGTHGVD MVKDDEALTH
210 220 230 240 250
QPAFGSDFYT RIRLSIDAMK RAEDISGRKK IYVPNVTSSN VLESIRRADF
260 270 280 290 300
VARLGGDAIM IDFVMGGCSL LHTLRNQDLG LIIHGHRTLF AALHRAQDFG
310 320 330 340 350
VDYMVWAKLF RVIGGDQVHT GTPAIGVMSS KKAAVLDIVA SVTEATYLPS
360 370 380 390 400
TSSASGLAQD FDGLRSVLPI CGAGLDPLTT EKIVKELGPR VALFAGGGVH
410 420 430 440 450
GHPGGTRAGA ASLRESVEAV HSGTSFEDFA ATRNVPWLNE ALKHFGAFDK
460
QSPNSDAGVN M
Length:461
Mass (Da):49,001
Last modified:March 8, 2011 - v1
Checksum:iD051356ADB9970DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37785.1.
RefSeqiWP_013542012.1. NC_014931.1.
YP_004155896.1. NC_014931.1.

Genome annotation databases

EnsemblBacteriaiADU37785; ADU37785; Varpa_3601.
KEGGivpe:Varpa_3601.
PATRICi45393261. VBIVarPar156291_3655.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002417 Genomic DNA. Translation: ADU37785.1.
RefSeqiWP_013542012.1. NC_014931.1.
YP_004155896.1. NC_014931.1.

3D structure databases

ProteinModelPortaliE6UYG1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU37785; ADU37785; Varpa_3601.
KEGGivpe:Varpa_3601.
PATRICi45393261. VBIVarPar156291_3655.

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.
OMAiHAAFTRN.

Enzyme and pathway databases

BioCyciVPAR595537:GHGJ-3637-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Variovorax paradoxus EPS."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EPSImported.

Entry informationi

Entry nameiE6UYG1_VARPE
AccessioniPrimary (citable) accession number: E6UYG1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 27, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.