Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

E6UYG1 (E6UYG1_VARPE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ADU37785.1
Gene names
Ordered Locus Names:Varpa_3601 EMBL ADU37785.1
OrganismVariovorax paradoxus (strain EPS) [Complete proteome] [HAMAP] EMBL ADU37785.1
Taxonomic identifier595537 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length461 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ADU37785.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E6UYG1 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: D051356ADB9970DA

FASTA46149,001
        10         20         30         40         50         60 
MKSSSSYLKY VDIGLEVDSE KNVVATYLIE KAVTSRLDGL AFLGSVAAES STGTWTDVKT 

        70         80         90        100        110        120 
ATAGANLIAG KVFAYDPAVG IAKIAYPIDL FEPGNISQLL TVIAGNAFGL ADVSKLKLMD 

       130        140        150        160        170        180 
ISLPKMYLAS YLGPRHGIKG VYERLKIEKN IPIIGSIIKP KCGLTASEHA EICFDAWSGL 

       190        200        210        220        230        240 
ASEGGTHGVD MVKDDEALTH QPAFGSDFYT RIRLSIDAMK RAEDISGRKK IYVPNVTSSN 

       250        260        270        280        290        300 
VLESIRRADF VARLGGDAIM IDFVMGGCSL LHTLRNQDLG LIIHGHRTLF AALHRAQDFG 

       310        320        330        340        350        360 
VDYMVWAKLF RVIGGDQVHT GTPAIGVMSS KKAAVLDIVA SVTEATYLPS TSSASGLAQD 

       370        380        390        400        410        420 
FDGLRSVLPI CGAGLDPLTT EKIVKELGPR VALFAGGGVH GHPGGTRAGA ASLRESVEAV 

       430        440        450        460 
HSGTSFEDFA ATRNVPWLNE ALKHFGAFDK QSPNSDAGVN M 

« Hide

References

[1]"Complete sequence of Variovorax paradoxus EPS."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EPS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002417 Genomic DNA. Translation: ADU37785.1.
RefSeqYP_004155896.1. NC_014931.1.

3D structure databases

ProteinModelPortalE6UYG1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU37785; ADU37785; Varpa_3601.
GeneID10130445.
KEGGvpe:Varpa_3601.
PATRIC45393261. VBIVarPar156291_3655.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230831.
KOK01601.
OMAFTQDWAS.

Enzyme and pathway databases

BioCycVPAR595537:GHGJ-3637-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE6UYG1_VARPE
AccessionPrimary (citable) accession number: E6UYG1
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 14, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)