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E6URL9 (E6URL9_CLOTL) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608
Gene names
Ordered Locus Names:Clo1313_0288
OrganismClostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8) [Complete proteome] [HAMAP] EMBL ADU73379.1
Taxonomic identifier637887 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length391 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622 RuleBase RU004247

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADU73379.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E6URL9 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: E8D3E5C6DD62681E

FASTA39143,669
        10         20         30         40         50         60 
MGMDYKFNRA WAEVNLDNIA HNVKEIRRIV DKKVEIMGVV KADAYGHGVM EIARTLLENG 

        70         80         90        100        110        120 
VTRLAVSMLD EAIQLRQNGI KVPILILSYT DPVRAEEIVL NDVTQTVFSH DLAEALSEAA 

       130        140        150        160        170        180 
VKHHRNVKIH IKIDTGMTRV GFMPGYSAVK NVVQISKLPG IIIEGLFTHF ASADEADKSY 

       190        200        210        220        230        240 
TYMQFERFMS IVGELNRIGV YIPVKHVCNS AALIEFPEMH LNMVRPGIAL YGLYPSDEVD 

       250        260        270        280        290        300 
KTKIDLRPAM SLKANVILVK DVEKDTFISY GRIFKTSRNS RIATIPIGYA DGYTRLLTGK 

       310        320        330        340        350        360 
GKVLLNGQLA PIVGRICMDQ CMVDITDIEG DVKVGDEAVL IGKQKDNEIK VEDLAKSVGT 

       370        380        390 
INYELVSIIG KRIPRVYLKE GKIYNVLNYL I

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References

[1]"Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313."
Feinberg L., Foden J., Barrett T., Davenport K.W., Bruce D., Detter C., Tapia R., Han C., Lapidus A., Lucas S., Cheng J.F., Pitluck S., Woyke T., Ivanova N., Mikhailova N., Land M., Hauser L., Argyros D.A. expand/collapse author list , Goodwin L., Hogsett D., Caiazza N.
J. Bacteriol. 193:2906-2907(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 1313 / LMG 6656 / LQ8.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002416 Genomic DNA. Translation: ADU73379.1.
RefSeqYP_005686830.1. NC_017304.1.

3D structure databases

ProteinModelPortalE6URL9.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU73379; ADU73379; Clo1313_0288.
GeneID12419986.
KEGGctx:Clo1313_0288.
PATRIC45475120. VBICloThe140364_0315.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMAGQWQDIA.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6URL9_CLOTL
AccessionPrimary (citable) accession number: E6URL9
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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