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E6U9U3 (E6U9U3_ETHHY) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Riboflavin biosynthesis protein RibD PIRNR PIRNR006769
Gene names
Ordered Locus Names:Ethha_0637
OrganismEthanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) [Complete proteome] [HAMAP] EMBL ADU26209.1
Taxonomic identifier663278 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Ruminococcaceae › Ethanoligenens ›

Protein attributes

Sequence length367 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate By similarity. PIRNR PIRNR006769

Cofactor

Binds 1 zinc ion By similarity. PIRNR PIRNR006769

Pathway

Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP. PIRNR PIRNR006769

Sequence similarities

In the C-terminal section; belongs to the HTP reductase family. PIRNR PIRNR006769

In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family. PIRNR PIRNR006769

Sequences

Sequence LengthMass (Da)Tools
E6U9U3 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 8572B6AF2D67B57F

FASTA36739,697
        10         20         30         40         50         60 
MSDETYMKLA LEYAEKGCGW VNPNPMVGAV VVKDGRVIGT GWHRRYGELH AERNALASCT 

        70         80         90        100        110        120 
EPPQGATLYV TLEPCCHYGK TPPCTDAILE SGIHRVVVGS VDPNPLVAGK GIRILRQRGI 

       130        140        150        160        170        180 
EVAEGVLGDA CTGINEVFFH FIRTRMPYVV MKYAMTMDGK IATCSGQSKW ITGETARRRT 

       190        200        210        220        230        240 
QEDRHRYSGI MVGIGTVLTD DPLLTCRLPD GRNPVRIVCD SRLRTPLNAQ IVRITGEAPT 

       250        260        270        280        290        300 
ILVTCSRDEA LAYPYRDAGC EVLTLPAKDG HVDLRALMTA LGKKGIDSVL LEGGGALNWS 

       310        320        330        340        350        360 
ALQSGIVNKV QAYVAPKLFG GINAKSPVAG MGVESPEQAF RLASPQVTRL GEDILLESEV 


LSCSQES

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References

[1]"Complete sequence of Ethanoligenens harbinense YUAN-3."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Misra M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N. expand/collapse author list , Wang A., Mouttaki H., He Z., Zhou J., Hemme C.L., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002400 Genomic DNA. Translation: ADU26209.1.
RefSeqYP_004090940.1. NC_014828.1.

3D structure databases

ProteinModelPortalE6U9U3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU26209; ADU26209; Ethha_0637.
GeneID10091588.
KEGGeha:Ethha_0637.
PATRIC45208274. VBIEthHar145175_0705.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000257443.
KOK11752.

Enzyme and pathway databases

BioCycEHAR663278:GIWT-651-MONOMER.

Family and domain databases

Gene3D3.40.430.10. 1 hit.
InterProIPR016192. APOBEC/CMP_deaminase_Zn-bd.
IPR002125. CMP_dCMP_Zn-bd.
IPR016193. Cytidine_deaminase-like.
IPR024072. DHFR-like_dom.
IPR004794. Eubact_RibD.
IPR011549. RibD_C.
IPR002734. RibDG_C.
[Graphical view]
PfamPF00383. dCMP_cyt_deam_1. 1 hit.
PF01872. RibD_C. 1 hit.
[Graphical view]
PIRSFPIRSF006769. RibD. 1 hit.
SUPFAMSSF53927. Cytidine_deaminase-like. 1 hit.
SSF53597. SSF53597. 1 hit.
TIGRFAMsTIGR00326. eubact_ribD. 1 hit.
TIGR00227. ribD_Cterm. 1 hit.
PROSITEPS00903. CYT_DCMP_DEAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6U9U3_ETHHY
AccessionPrimary (citable) accession number: E6U9U3
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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