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E6U338 (E6U338_ETHHY) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB HAMAP-Rule MF_00685

EC=2.4.1.18 HAMAP-Rule MF_00685
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase HAMAP-Rule MF_00685
Alpha-(1->4)-glucan branching enzyme HAMAP-Rule MF_00685
Glycogen branching enzyme HAMAP-Rule MF_00685
Gene names
Name:glgB HAMAP-Rule MF_00685
Ordered Locus Names:Ethha_1992 EMBL ADU27510.1
OrganismEthanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) [Complete proteome] [HAMAP] EMBL ADU27510.1
Taxonomic identifier663278 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeEthanoligenens

Protein attributes

Sequence length634 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685 SAAS SAAS004193

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP-Rule MF_00685

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3131Nucleophile By similarity HAMAP-Rule MF_00685
Active site3661Proton donor By similarity HAMAP-Rule MF_00685

Sequences

Sequence LengthMass (Da)Tools
E6U338 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: B7417F916BBDD377

FASTA63473,621
        10         20         30         40         50         60 
MYTNAPKKTG REQELQCFHE SVYPLSFEYF GGHSSHRSKK SGVVFRVWAP KAVSVSIVGD 

        70         80         90        100        110        120 
FNNWDASKNP MISVDDQGVW EGFVPGIKSF DIYKYQIETA DGKTLLKSDP YATHMETRPD 

       130        140        150        160        170        180 
TASRYYNLSG YHWKDQEWQK KKEKKSAYDV PMNIYELHAG SWKKYPDGNP FEYRKLAEEL 

       190        200        210        220        230        240 
IPYLQKMGYT HVELMPIMEY PLDNSWGYQV TGYFAPTSRY GSPRDFMAFV DYCHQADIGV 

       250        260        270        280        290        300 
IMDWVPAHFP KDAHGLYRFD GDCCYEYTDP LKQEHKSWGT CVFDYSKSEV RSFLVSNAIF 

       310        320        330        340        350        360 
WLQKYHIDGL RVDAVASMLY LDYDRKNGEW RPNQYGGHEN LEAVSFLQEL NREVFSRFPN 

       370        380        390        400        410        420 
ALMIAEESTA WPLVTKPVDV GGLGFNFKWN MGWMNDMLDY VSTDPYFRKD HHKDITFSFH 

       430        440        450        460        470        480 
YAFSENYILP ISHDEVVHGK RSLLEKMPGD KAEQFAGVRV FLAYMIAHPG KKLLFMGSEF 

       490        500        510        520        530        540 
GQVHEWDCHD ALQWQLLGEK GHQNLQDFTA ALNHFYLDQS PLWQNDFSWE GFQWISYDDN 

       550        560        570        580        590        600 
LQNIIAFRRI DRKGEELVCL FNFAPVKRDD YRIGIPAAGY YQEAFNTDAE QFGGTGESNK 

       610        620        630 
EPVPTEKIPL HGYQQSIALT VPPMAALFLK HQPK 

« Hide

References

[1]"Complete sequence of Ethanoligenens harbinense YUAN-3."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Misra M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N. expand/collapse author list , Wang A., Mouttaki H., He Z., Zhou J., Hemme C.L., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002400 Genomic DNA. Translation: ADU27510.1.
RefSeqYP_004092241.1. NC_014828.1.

3D structure databases

ProteinModelPortalE6U338.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU27510; ADU27510; Ethha_1992.
GeneID10092972.
KEGGeha:Ethha_1992.
PATRIC45211264. VBIEthHar145175_2168.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000283037.
KOK00700.
OMACHLNNIG.

Enzyme and pathway databases

BioCycEHAR663278:GIWT-2033-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PTHR10357:SF13. PTHR10357:SF13. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE6U338_ETHHY
AccessionPrimary (citable) accession number: E6U338
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: February 19, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)