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E6TPR8

- E6TPR8_MYCSR

UniProt

E6TPR8 - E6TPR8_MYCSR

Protein
Submitted name:

DNA polymerase LigD-like ligase domain-containing protein

Gene

Mspyr1_55390

Organism
Mycobacterium sp. (strain Spyr1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMSP278137:GHD6-5494-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD-like ligase domain-containing proteinImported
    Gene namesi
    Ordered Locus Names:Mspyr1_55390Imported
    Encoded oniPlasmid pMSPYR101Imported
    OrganismiMycobacterium sp. (strain Spyr1)Imported
    Taxonomic identifieri278137 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000008916: Plasmid pMSPYR101

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiGKPSFHE.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6TPR8-1 [UniParc]FASTAAdd to Basket

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    MTRASLAPDR LVAPAPMLAT LGPAPRGGQF AVEVKFDGQR GILTVDRRVR    50
    VTSRNGADIT ETFPELSAVA AAVGGRRMVL DGEIVAVDEH GRPSFRRLQR 100
    RWPQQRRPGA QLVREVPTRF LAFDVMNIEG EDITHWPYRE RRELLDTLMV 150
    MESSPALTVP RHWTDVAPAD MLAICADQHH EGIVCKRLDS PYRSGRSRDW 200
    IKVPVRATTE AVIVGAFAGP RGEVGALILA AHDEAGRLVL LGQVGTGFSG 250
    AERRRLATLL AGTEAPAPPV AEGASMSGVQ WFKPRYVGEV AYREYHAGKG 300
    LRHASWKGLR TAPVSAVCLP RDTGAAPG 328
    Length:328
    Mass (Da):35,682
    Last modified:March 8, 2011 - v1
    Checksum:i2E8011F639D6E2B4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002386 Genomic DNA. Translation: ADU02037.1.
    RefSeqiYP_004074518.1. NC_014811.1.

    Genome annotation databases

    EnsemblBacteriaiADU02037; ADU02037; Mspyr1_55390.
    GeneIDi10044335.
    KEGGimsp:Mspyr1_55390.
    PATRICi45280921. VBIMycSp109077_0183.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002386 Genomic DNA. Translation: ADU02037.1 .
    RefSeqi YP_004074518.1. NC_014811.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADU02037 ; ADU02037 ; Mspyr1_55390 .
    GeneIDi 10044335.
    KEGGi msp:Mspyr1_55390.
    PATRICi 45280921. VBIMycSp109077_0183.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi GKPSFHE.

    Enzyme and pathway databases

    BioCyci MSP278137:GHD6-5494-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of plasmid 1 of Mycobacterium sp. Spyr1."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., LaButti K., Ivanova N.M., Mikhailova N.M., Land M., Hauser L., Koukkou A.I., Drainas C., Kyrpides N., Woyke T.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Spyr1Imported.

    Entry informationi

    Entry nameiE6TPR8_MYCSR
    AccessioniPrimary (citable) accession number: E6TPR8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3