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Protein
Submitted name:

DNA polymerase LigD-like ligase domain-containing protein

Gene

Mspyr1_55390

Organism
Mycobacterium sp. (strain Spyr1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP278137:GHD6-5494-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD-like ligase domain-containing proteinImported
Gene namesi
Ordered Locus Names:Mspyr1_55390Imported
Encoded oniPlasmid pMSPYR101Imported
OrganismiMycobacterium sp. (strain Spyr1)Imported
Taxonomic identifieri278137 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000008916 Componenti: Plasmid pMSPYR101

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6TPR8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRASLAPDR LVAPAPMLAT LGPAPRGGQF AVEVKFDGQR GILTVDRRVR
60 70 80 90 100
VTSRNGADIT ETFPELSAVA AAVGGRRMVL DGEIVAVDEH GRPSFRRLQR
110 120 130 140 150
RWPQQRRPGA QLVREVPTRF LAFDVMNIEG EDITHWPYRE RRELLDTLMV
160 170 180 190 200
MESSPALTVP RHWTDVAPAD MLAICADQHH EGIVCKRLDS PYRSGRSRDW
210 220 230 240 250
IKVPVRATTE AVIVGAFAGP RGEVGALILA AHDEAGRLVL LGQVGTGFSG
260 270 280 290 300
AERRRLATLL AGTEAPAPPV AEGASMSGVQ WFKPRYVGEV AYREYHAGKG
310 320
LRHASWKGLR TAPVSAVCLP RDTGAAPG
Length:328
Mass (Da):35,682
Last modified:March 8, 2011 - v1
Checksum:i2E8011F639D6E2B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002386 Genomic DNA. Translation: ADU02037.1.
RefSeqiWP_013470246.1. NC_014811.1.
YP_004074518.1. NC_014811.1.

Genome annotation databases

EnsemblBacteriaiADU02037; ADU02037; Mspyr1_55390.
KEGGimsp:Mspyr1_55390.
PATRICi45280921. VBIMycSp109077_0183.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002386 Genomic DNA. Translation: ADU02037.1.
RefSeqiWP_013470246.1. NC_014811.1.
YP_004074518.1. NC_014811.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU02037; ADU02037; Mspyr1_55390.
KEGGimsp:Mspyr1_55390.
PATRICi45280921. VBIMycSp109077_0183.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciMSP278137:GHD6-5494-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of plasmid 1 of Mycobacterium sp. Spyr1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., LaButti K., Ivanova N.M., Mikhailova N.M., Land M., Hauser L., Koukkou A.I., Drainas C., Kyrpides N., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Spyr1Imported.

Entry informationi

Entry nameiE6TPR8_MYCSR
AccessioniPrimary (citable) accession number: E6TPR8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: June 24, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.