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E6TPR8

- E6TPR8_MYCSR

UniProt

E6TPR8 - E6TPR8_MYCSR

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Protein
Submitted name:

DNA polymerase LigD-like ligase domain-containing protein

Gene

Mspyr1_55390

Organism
Mycobacterium sp. (strain Spyr1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP278137:GHD6-5494-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD-like ligase domain-containing proteinImported
Gene namesi
Ordered Locus Names:Mspyr1_55390Imported
Encoded oniPlasmid pMSPYR101Imported
OrganismiMycobacterium sp. (strain Spyr1)Imported
Taxonomic identifieri278137 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000008916: Plasmid pMSPYR101

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiGKPSFHE.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6TPR8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTRASLAPDR LVAPAPMLAT LGPAPRGGQF AVEVKFDGQR GILTVDRRVR
60 70 80 90 100
VTSRNGADIT ETFPELSAVA AAVGGRRMVL DGEIVAVDEH GRPSFRRLQR
110 120 130 140 150
RWPQQRRPGA QLVREVPTRF LAFDVMNIEG EDITHWPYRE RRELLDTLMV
160 170 180 190 200
MESSPALTVP RHWTDVAPAD MLAICADQHH EGIVCKRLDS PYRSGRSRDW
210 220 230 240 250
IKVPVRATTE AVIVGAFAGP RGEVGALILA AHDEAGRLVL LGQVGTGFSG
260 270 280 290 300
AERRRLATLL AGTEAPAPPV AEGASMSGVQ WFKPRYVGEV AYREYHAGKG
310 320
LRHASWKGLR TAPVSAVCLP RDTGAAPG
Length:328
Mass (Da):35,682
Last modified:March 8, 2011 - v1
Checksum:i2E8011F639D6E2B4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002386 Genomic DNA. Translation: ADU02037.1.
RefSeqiWP_013470246.1. NC_014811.1.
YP_004074518.1. NC_014811.1.

Genome annotation databases

EnsemblBacteriaiADU02037; ADU02037; Mspyr1_55390.
GeneIDi10044335.
KEGGimsp:Mspyr1_55390.
PATRICi45280921. VBIMycSp109077_0183.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002386 Genomic DNA. Translation: ADU02037.1 .
RefSeqi WP_013470246.1. NC_014811.1.
YP_004074518.1. NC_014811.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADU02037 ; ADU02037 ; Mspyr1_55390 .
GeneIDi 10044335.
KEGGi msp:Mspyr1_55390.
PATRICi 45280921. VBIMycSp109077_0183.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi GKPSFHE.

Enzyme and pathway databases

BioCyci MSP278137:GHD6-5494-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of plasmid 1 of Mycobacterium sp. Spyr1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., LaButti K., Ivanova N.M., Mikhailova N.M., Land M., Hauser L., Koukkou A.I., Drainas C., Kyrpides N., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Spyr1Imported.

Entry informationi

Entry nameiE6TPR8_MYCSR
AccessioniPrimary (citable) accession number: E6TPR8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: October 29, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3