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Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotationSAAS annotation
With S4 and S12 plays an important role in translational accuracy.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotation, RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5UniRule annotationSAAS annotation
Gene namesi
Name:rpsEUniRule annotation
Ordered Locus Names:Bache_1073Imported
OrganismiBacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)Imported
Taxonomic identifieri693979 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
Proteomesi
  • UP000008630 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi693979.Bache_1073.

Structurei

3D structure databases

ProteinModelPortaliE6SRY1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 79S5 DRBMInterPro annotationAdd BLAST64

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Sequence similaritiesi

Belongs to the universal ribosomal protein uS5 family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4108RA9. Bacteria.
COG0098. LUCA.
HOGENOMiHOG000072595.
KOiK02988.
OMAiKRGCGSW.
OrthoDBiPOG091H01QP.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B. 1 hit.
InterProiView protein in InterPro
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiView protein in Pfam
PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.

Sequencei

Sequence statusi: Complete.

E6SRY1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGLNNRVKI TNDIELKDRL VAINRVTKVT KGGRTFSFSA IVVVGNEEGI
60 70 80 90 100
IGWGLGKAGE VTAAIAKGVE SAKKNLTKVP VLKGTVPHEQ SAKFGGAEVF
110 120 130 140 150
IKPASHGTGV VAGGAMRAVL ESVGVTDVLA KSKGSSNPHN LVKATILALS
160 170
EMRDARMVAQ NRGVSMEKVF RG
Length:172
Mass (Da):17,948
Last modified:March 8, 2011 - v1
Checksum:i43D714D6B7AA16F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002352 Genomic DNA. Translation: ADV43083.1.
RefSeqiWP_005656517.1. NC_014933.1.

Genome annotation databases

EnsemblBacteriaiADV43083; ADV43083; Bache_1073.
GeneIDi31797986.
KEGGibhl:Bache_1073.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiE6SRY1_BACT6
AccessioniPrimary (citable) accession number: E6SRY1
Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: July 5, 2017
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported