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E6SRY1

- E6SRY1_BACT6

UniProt

E6SRY1 - E6SRY1_BACT6

Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotationSAAS annotation
    With S4 and S12 plays an important role in translational accuracy.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBHEL693979:GHID-1103-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S5UniRule annotation
    Gene namesi
    Name:rpsEUniRule annotation
    Ordered Locus Names:Bache_1073Imported
    OrganismiBacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)Imported
    Taxonomic identifieri693979 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
    ProteomesiUP000008630: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliE6SRY1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini16 – 7964S5 DRBMUniRule annotationAdd
    BLAST

    Domaini

    The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

    Sequence similaritiesi

    Belongs to the ribosomal protein S5P family.UniRule annotation
    Contains 1 S5 DRBM domain.UniRule annotation
    Contains S5 DRBM domain.SAAS annotation
    Contains SDRBM domain.

    Phylogenomic databases

    HOGENOMiHOG000072595.
    KOiK02988.
    OMAiGRRIMAF.

    Family and domain databases

    Gene3Di3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPiMF_01307_B. Ribosomal_S5_B.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view]
    PANTHERiPTHR13718. PTHR13718. 1 hit.
    PfamiPF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
    PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6SRY1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGLNNRVKI TNDIELKDRL VAINRVTKVT KGGRTFSFSA IVVVGNEEGI    50
    IGWGLGKAGE VTAAIAKGVE SAKKNLTKVP VLKGTVPHEQ SAKFGGAEVF 100
    IKPASHGTGV VAGGAMRAVL ESVGVTDVLA KSKGSSNPHN LVKATILALS 150
    EMRDARMVAQ NRGVSMEKVF RG 172
    Length:172
    Mass (Da):17,948
    Last modified:March 8, 2011 - v1
    Checksum:i43D714D6B7AA16F1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002352 Genomic DNA. Translation: ADV43083.1.
    RefSeqiYP_004160669.1. NC_014933.1.

    Genome annotation databases

    EnsemblBacteriaiADV43083; ADV43083; Bache_1073.
    GeneIDi10139826.
    KEGGibhl:Bache_1073.
    PATRICi45172620. VBIBacHel147569_1140.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002352 Genomic DNA. Translation: ADV43083.1 .
    RefSeqi YP_004160669.1. NC_014933.1.

    3D structure databases

    ProteinModelPortali E6SRY1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADV43083 ; ADV43083 ; Bache_1073 .
    GeneIDi 10139826.
    KEGGi bhl:Bache_1073.
    PATRICi 45172620. VBIBacHel147569_1140.

    Phylogenomic databases

    HOGENOMi HOG000072595.
    KOi K02988.
    OMAi GRRIMAF.

    Enzyme and pathway databases

    BioCyci BHEL693979:GHID-1103-MONOMER.

    Family and domain databases

    Gene3Di 3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPi MF_01307_B. Ribosomal_S5_B.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view ]
    PANTHERi PTHR13718. PTHR13718. 1 hit.
    Pfami PF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    TIGRFAMsi TIGR01021. rpsE_bact. 1 hit.
    PROSITEi PS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: P 36-108.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108Imported.

    Entry informationi

    Entry nameiE6SRY1_BACT6
    AccessioniPrimary (citable) accession number: E6SRY1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3