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Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotationSAAS annotation
With S4 and S12 plays an important role in translational accuracy.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciBHEL693979:GHID-1103-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5UniRule annotationSAAS annotation
Gene namesi
Name:rpsEUniRule annotation
Ordered Locus Names:Bache_1073Imported
OrganismiBacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108)Imported
Taxonomic identifieri693979 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
ProteomesiUP000008630 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotation
Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 (By similarity).SAAS annotation

Protein-protein interaction databases

STRINGi693979.Bache_1073.

Structurei

3D structure databases

ProteinModelPortaliE6SRY1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini16 – 7964S5 DRBMUniRule annotationAdd
BLAST

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Sequence similaritiesi

Belongs to the ribosomal protein S5P family.UniRule annotation
Contains 1 S5 DRBM domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000072595.
KOiK02988.
OMAiVKGTIPH.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6SRY1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGLNNRVKI TNDIELKDRL VAINRVTKVT KGGRTFSFSA IVVVGNEEGI
60 70 80 90 100
IGWGLGKAGE VTAAIAKGVE SAKKNLTKVP VLKGTVPHEQ SAKFGGAEVF
110 120 130 140 150
IKPASHGTGV VAGGAMRAVL ESVGVTDVLA KSKGSSNPHN LVKATILALS
160 170
EMRDARMVAQ NRGVSMEKVF RG
Length:172
Mass (Da):17,948
Last modified:March 8, 2011 - v1
Checksum:i43D714D6B7AA16F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002352 Genomic DNA. Translation: ADV43083.1.
RefSeqiWP_005656517.1. NC_014933.1.
YP_004160669.1. NC_014933.1.

Genome annotation databases

EnsemblBacteriaiADV43083; ADV43083; Bache_1073.
GeneIDi10139826.
KEGGibhl:Bache_1073.
PATRICi45172620. VBIBacHel147569_1140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002352 Genomic DNA. Translation: ADV43083.1.
RefSeqiWP_005656517.1. NC_014933.1.
YP_004160669.1. NC_014933.1.

3D structure databases

ProteinModelPortaliE6SRY1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi693979.Bache_1073.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV43083; ADV43083; Bache_1073.
GeneIDi10139826.
KEGGibhl:Bache_1073.
PATRICi45172620. VBIBacHel147569_1140.

Phylogenomic databases

HOGENOMiHOG000072595.
KOiK02988.
OMAiVKGTIPH.

Enzyme and pathway databases

BioCyciBHEL693979:GHID-1103-MONOMER.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: P 36-108.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108Imported.

Entry informationi

Entry nameiE6SRY1_BACT6
AccessioniPrimary (citable) accession number: E6SRY1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: June 24, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.