E6SRY1 (E6SRY1_BACT6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5 HAMAP-Rule MF_01307

Gene names

Name:	rpsE HAMAP-Rule MF_01307
Ordered Locus Names:	Bache_1073

Organism

Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) [Complete proteome] [HAMAP] EMBL ADV43083.1

Taxonomic identifier

693979 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides › Bacteroides helcogenes

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307 With S4 and S12 plays an important role in translational accuracy By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. RuleBase RU003823 HAMAP-Rule MF_01307 Contains 1 S5 DRBM domain. SAAS SAAS005712 HAMAP-Rule MF_01307

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS005712 HAMAP-Rule MF_01307
Molecular function	Ribonucleoprotein Ribosomal protein SAAS SAAS005712 RuleBase RU003823 HAMAP-Rule MF_01307 EMBL ADV43083.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	16 – 79	64	S5 DRBM By similarity HAMAP-Rule MF_01307

Sequences

	Sequence		Length	Mass (Da)
	E6SRY1 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: 43D714D6B7AA16F1	FASTA	172	17,948
	10 20 30 40 50 60 MAGLNNRVKI TNDIELKDRL VAINRVTKVT KGGRTFSFSA IVVVGNEEGI IGWGLGKAGE 70 80 90 100 110 120 VTAAIAKGVE SAKKNLTKVP VLKGTVPHEQ SAKFGGAEVF IKPASHGTGV VAGGAMRAVL 130 140 150 160 170 ESVGVTDVLA KSKGSSNPHN LVKATILALS EMRDARMVAQ NRGVSMEKVF RG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of Bacteroides helcogenes P 36-108." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Zeytun A., Brettin T., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F. , Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: P 36-108.
[2]	"Complete genome sequence of Bacteroides helcogenes type strain (P 36-108)." Pati A., Gronow S., Zeytun A., Lapidus A., Nolan M., Hammon N., Deshpande S., Cheng J., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Chen A., Palaniappan K. , Land M., Hauser L., Chang Y., Jeffries C., Detter J., Brambilla E., Rohde M., Goker, M., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H., Lucas S. Stand. Genomic Sci. 4:45-53(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002352 Genomic DNA. Translation: ADV43083.1.
RefSeq	YP_004160669.1. NC_014933.1.
3D structure databases
ProteinModelPortal	E6SRY1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV43083; ADV43083; Bache_1073.
GeneID	10139826.
KEGG	bhl:Bache_1073.
PATRIC	45172620. VBIBacHel147569_1140.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000072595.
KO	K02988.
Enzyme and pathway databases
BioCyc	BHEL693979:GHID-1103-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_B. Ribosomal_S5_B.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6SRY1_BACT6

Accession

Primary (citable) accession number: E6SRY1

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)