E6SRA8 (E6SRA8_BACT6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118

Gene names

Name:	tuf HAMAP-Rule MF_00118
Ordered Locus Names:	Bache_1042

Organism

Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) [Complete proteome] [HAMAP] EMBL ADV43052.1

Taxonomic identifier

693979 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides › Bacteroides helcogenes

Protein attributes

Sequence length	394 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00118
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00118.
Sequence similarities	Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00118
Ligand	GTP-binding HAMAP-Rule MF_00118 RuleBase RU000323 Nucleotide-binding
Molecular function	Elongation factor HAMAP-Rule MF_00118 RuleBase RU000325 EMBL ADV43052.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	GTP catabolic process Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	GTP binding Inferred from electronic annotation. Source: HAMAP GTPase activity Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Nucleotide binding	19 – 26	8	GTP By similarity HAMAP-Rule MF_00118
	Nucleotide binding	81 – 85	5	GTP By similarity HAMAP-Rule MF_00118
	Nucleotide binding	136 – 139	4	GTP By similarity HAMAP-Rule MF_00118

Sequences

	Sequence		Length	Mass (Da)
	E6SRA8 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: 8E8AB317B43F056C	FASTA	394	43,490
	10 20 30 40 50 60 MAKEKFERTK PHVNIGTIGH VDHGKTTLTA AITTVLAKKG LSELRSFDSI DNAPEEKERG 70 80 90 100 110 120 ITINTSHVEY ETANRHYAHV DCPGHADYVK NMVTGAAQMD GAIIVVAATD GPMPQTREHI 130 140 150 160 170 180 LLARQVNVPR LVVFMNKCDM VDDPEMLELV EMEMRELLSA YEFDGDNTPF IQGSALGALN 190 200 210 220 230 240 GVEKWENKVM ELMDAVDTWI PLPPRDVDKP FLMPVEDVFS ITGRGTVATG RIEAGVIHVG 250 260 270 280 290 300 DEVEILGLGE DKKSVVTGVE MFRKLLDQGE AGDNVGLLLR GIDKNEIKRG MVLCKPGQIK 310 320 330 340 350 360 PHSKFKASIY VLKKEEGGRH TPFHNKYRPQ FYLRTMDCTG EITLPEGTEM VMPGDNVAIN 370 380 390 VELIYPVALN VGLRFAIREG GRTVGSGQIT EILD

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of Bacteroides helcogenes P 36-108." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Zeytun A., Brettin T., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F. , Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: P 36-108.
[2]	"Complete genome sequence of Bacteroides helcogenes type strain (P 36-108)." Pati A., Gronow S., Zeytun A., Lapidus A., Nolan M., Hammon N., Deshpande S., Cheng J., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Chen A., Palaniappan K. , Land M., Hauser L., Chang Y., Jeffries C., Detter J., Brambilla E., Rohde M., Goker, M., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H., Lucas S. Stand. Genomic Sci. 4:45-53(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002352 Genomic DNA. Translation: ADV43052.1.
RefSeq	YP_004160638.1. NC_014933.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV43052; ADV43052; Bache_1042.
GeneID	10139794.
KEGG	bhl:Bache_1042.
PATRIC	45172556. VBIBacHel147569_1109.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000229290.
KO	K02358.
Enzyme and pathway databases
BioCyc	BHEL693979:GHID-1071-MONOMER.
Family and domain databases
HAMAP	MF_00118_B. EF_Tu_B.
InterPro	IPR000795. EF_GTP-bd_dom. IPR005225. Small_GTP-bd_dom. IPR009001. Transl_elong_EF1A/Init_IF2_C. IPR004161. Transl_elong_EFTu/EF1A_2. IPR004541. Transl_elong_EFTu/EF1A_bac/org. IPR004160. Transl_elong_EFTu/EF1A_C. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF00009. GTP_EFTU. 1 hit. PF03144. GTP_EFTU_D2. 1 hit. PF03143. GTP_EFTU_D3. 1 hit. [Graphical view]
PRINTS	PR00315. ELONGATNFCT.
SUPFAM	SSF50465. Elong_init_C. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR00485. EF-Tu. 1 hit. TIGR00231. small_GTP. 1 hit.
PROSITE	PS00301. EFACTOR_GTP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E6SRA8_BACT6

Accession

Primary (citable) accession number: E6SRA8

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)