Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Intca_1898

Organism
Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciICAL710696:GH9U-1931-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Intca_1898Imported
OrganismiIntrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP)Imported
Taxonomic identifieri710696 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeIntrasporangiaceaeIntrasporangium
ProteomesiUP000008914 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

E6SBC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAKQTPAL VLDVDGYDVR LTNPDRVYFS EGGQTKLDLA NYYLSVGPGI
60 70 80 90 100
VNALRDRPCM LHRFPKGVEG PKVHQKRLPA GAPPWVETVR LHFPRFGLHA
110 120 130 140 150
DELCVQRLAD VIWAVQMSTV EFHPWNSRRA DTEKPDEWRI DLDPMPRCGY
160 170 180 190 200
DTVRRAAHVS REILGELGAV GWPKTSGGRG LHIYVRIAPV HGFQDVRRAA
210 220 230 240 250
LAFAREVERR LPDDVTTAWW RRDRAPDDLF VDYNQNARDH TIAAAYSVRG
260 270 280 290 300
NSRGTVSAPV TWDEIDDAVP DDFTIATMPD RFARLGDLHA GIDDAVFDLA
310 320
PLLEWAERDE RAGQDTPPEP EE
Length:322
Mass (Da):36,261
Last modified:March 7, 2011 - v1
Checksum:i9F6EAB6513D07A3A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002343 Genomic DNA. Translation: ADU48409.1.
RefSeqiYP_004099136.1. NC_014830.1.

Genome annotation databases

EnsemblBacteriaiADU48409; ADU48409; Intca_1898.
KEGGiica:Intca_1898.
PATRICi45245338. VBIIntCal153415_1937.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002343 Genomic DNA. Translation: ADU48409.1.
RefSeqiYP_004099136.1. NC_014830.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADU48409; ADU48409; Intca_1898.
KEGGiica:Intca_1898.
PATRICi45245338. VBIIntCal153415_1937.

Phylogenomic databases

HOGENOMiHOG000244654.

Enzyme and pathway databases

BioCyciICAL710696:GH9U-1931-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIPImported.

Entry informationi

Entry nameiE6SBC1_INTC7
AccessioniPrimary (citable) accession number: E6SBC1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2011
Last sequence update: March 7, 2011
Last modified: March 31, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.