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E6RP84 (E6RP84_PSEU9) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ADT67906.1
Gene names
Ordered Locus Names:PSM_A0958 EMBL ADT67906.1
OrganismPseudoalteromonas sp. (strain SM9913) [Complete proteome] [HAMAP] EMBL ADT67906.1
Taxonomic identifier234831 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADT67906.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E6RP84 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 4C2D68261CDB0BC3

FASTA28032,075
        10         20         30         40         50         60 
MVTIQRYLFI FLTLFSASLL AQLPQVQLAD VYDETKHNDI RQYLVSEKFD GVRAIWTGKQ 

        70         80         90        100        110        120 
FVTRQGNPIN PPKWFTAPLP DVWLDGELWT KRGQFSVLSG IVRTKIPDDL LWQTVTYQVF 

       130        140        150        160        170        180 
DMPDTNTPFH RRYQNYLSLI TQLNSPHIKA VKQYQFSDNQ QLSDYFNKVT KQGGEGVMLH 

       190        200        210        220        230        240 
LAEAKHTSGR SSALLKLKPY LDAEALVIEY LPGKGKYTGM LGALRVQTKQ GVTFSIGTGF 

       250        260        270        280 
SDEERKRPPA IGSTITYRYH GYTKNGLPRF ASFLRERPEK 

« Hide

References

[1]"Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
ISME J. 5:274-284(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SM9913.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001796 Genomic DNA. Translation: ADT67906.1.
RefSeqYP_004068057.1. NC_014803.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADT67906; ADT67906; PSM_A0958.
GeneID10037848.
KEGGpsm:PSM_A0958.
PATRIC45329325. VBIPseSp136886_1572.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.

Enzyme and pathway databases

BioCycPSP234831:GH93-975-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6RP84_PSEU9
AccessionPrimary (citable) accession number: E6RP84
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: July 9, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)