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E6RP84

- E6RP84_PSEU9

UniProt

E6RP84 - E6RP84_PSEU9

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Protein
Submitted name:

DNA ligase

Gene

PSM_A0958

Organism
Pseudoalteromonas sp. (strain SM9913)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSP234831:GH93-975-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:PSM_A0958Imported
OrganismiPseudoalteromonas sp. (strain SM9913)Imported
Taxonomic identifieri234831 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
ProteomesiUP000007933: Chromosome I

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6RP84-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MVTIQRYLFI FLTLFSASLL AQLPQVQLAD VYDETKHNDI RQYLVSEKFD
60 70 80 90 100
GVRAIWTGKQ FVTRQGNPIN PPKWFTAPLP DVWLDGELWT KRGQFSVLSG
110 120 130 140 150
IVRTKIPDDL LWQTVTYQVF DMPDTNTPFH RRYQNYLSLI TQLNSPHIKA
160 170 180 190 200
VKQYQFSDNQ QLSDYFNKVT KQGGEGVMLH LAEAKHTSGR SSALLKLKPY
210 220 230 240 250
LDAEALVIEY LPGKGKYTGM LGALRVQTKQ GVTFSIGTGF SDEERKRPPA
260 270 280
IGSTITYRYH GYTKNGLPRF ASFLRERPEK
Length:280
Mass (Da):32,075
Last modified:March 8, 2011 - v1
Checksum:i4C2D68261CDB0BC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001796 Genomic DNA. Translation: ADT67906.1.
RefSeqiWP_013464443.1. NC_014803.1.
YP_004068057.1. NC_014803.1.

Genome annotation databases

EnsemblBacteriaiADT67906; ADT67906; PSM_A0958.
GeneIDi10037848.
KEGGipsm:PSM_A0958.
PATRICi45329325. VBIPseSp136886_1572.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001796 Genomic DNA. Translation: ADT67906.1 .
RefSeqi WP_013464443.1. NC_014803.1.
YP_004068057.1. NC_014803.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADT67906 ; ADT67906 ; PSM_A0958 .
GeneIDi 10037848.
KEGGi psm:PSM_A0958.
PATRICi 45329325. VBIPseSp136886_1572.

Phylogenomic databases

HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.

Enzyme and pathway databases

BioCyci PSP234831:GH93-975-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
    Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
    ISME J. 5:274-284(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SM9913Imported.

Entry informationi

Entry nameiE6RP84_PSEU9
AccessioniPrimary (citable) accession number: E6RP84
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: October 1, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3