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E6RJ40

- E6RJ40_PSEU9

UniProt

E6RJ40 - E6RJ40_PSEU9

Protein

Elongation factor Tu

Gene

tufA

Organism
Pseudoalteromonas sp. (strain SM9913)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi81 – 855GTPUniRule annotation
    Nucleotide bindingi136 – 1394GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciPSP234831:GH93-250-MONOMER.
    PSP234831:GH93-3055-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tufAImported
    Synonyms:tufUniRule annotation
    Ordered Locus Names:PSM_A0242Imported, PSM_A0548Imported
    OrganismiPseudoalteromonas sp. (strain SM9913)Imported
    Taxonomic identifieri234831 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
    ProteomesiUP000007933: Chromosome I

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000229290.
    KOiK02358.
    OMAiTTIMNDK.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E6RJ40-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKEKFERVK PHVNVGTIGH VDHGKTTLTA AITNVLAKVY GGVAKDFASI    50
    DNAPEERERG ITISTSHVEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD 100
    GAILVVAATD GPMPQTREHI LLSRQVGVPY IVVFMNKCDM VDDEELLELV 150
    EMEVRELLSE YDFPGDDLPL IQGSALKALE GEEQWEAKIV ELAEALDTYI 200
    PEPERDIDKP FIMPIEDVFS IQGRGTVVTG RVEAGIINVN DEVEIVGIKE 250
    TTKSTCTGVE MFRKLLDEGR AGENIGALLR GTKREDVERG QVLAKPGSIK 300
    PHTTFTSEVY VLSKDEGGRH TPFFKGYRPQ FYFRTTDVTG DVQLPEGVEM 350
    VMPGDNVKMT VTLIAPIAMD EGLRFAIREG GRTVGAGVVA TIVE 394
    Length:394
    Mass (Da):43,257
    Last modified:March 8, 2011 - v1
    Checksum:iCB0920D825319D4C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001796 Genomic DNA. Translation: ADT67197.1.
    CP001796 Genomic DNA. Translation: ADT67500.1.
    RefSeqiYP_004067349.1. NC_014803.1.
    YP_004070075.1. NC_014803.1.

    Genome annotation databases

    EnsemblBacteriaiADT67197; ADT67197; PSM_A0242.
    ADT67500; ADT67500; PSM_A0548.
    GeneIDi10037138.
    10039876.
    KEGGipsm:PSM_A0242.
    psm:PSM_A0548.
    PATRICi45327878. VBIPseSp136886_0867.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001796 Genomic DNA. Translation: ADT67197.1 .
    CP001796 Genomic DNA. Translation: ADT67500.1 .
    RefSeqi YP_004067349.1. NC_014803.1.
    YP_004070075.1. NC_014803.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADT67197 ; ADT67197 ; PSM_A0242 .
    ADT67500 ; ADT67500 ; PSM_A0548 .
    GeneIDi 10037138.
    10039876.
    KEGGi psm:PSM_A0242.
    psm:PSM_A0548.
    PATRICi 45327878. VBIPseSp136886_0867.

    Phylogenomic databases

    HOGENOMi HOG000229290.
    KOi K02358.
    OMAi TTIMNDK.

    Enzyme and pathway databases

    BioCyci PSP234831:GH93-250-MONOMER.
    PSP234831:GH93-3055-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Qin Q., Zhang Y., Chen X.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
      Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
      ISME J. 5:274-284(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SM9913Imported.

    Entry informationi

    Entry nameiE6RJ40_PSEU9
    AccessioniPrimary (citable) accession number: E6RJ40
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3