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E6RJ40 (E6RJ40_PSEU9) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufA EMBL ADT67197.1
Synonyms:tuf HAMAP-Rule MF_00118
Ordered Locus Names:PSM_A0242 EMBL ADT67197.1, PSM_A0548 EMBL ADT67500.1
OrganismPseudoalteromonas sp. (strain SM9913) [Complete proteome] [HAMAP] EMBL ADT67197.1
Taxonomic identifier234831 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
E6RJ40 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: CB0920D825319D4C

FASTA39443,257
        10         20         30         40         50         60 
MAKEKFERVK PHVNVGTIGH VDHGKTTLTA AITNVLAKVY GGVAKDFASI DNAPEERERG 

        70         80         90        100        110        120 
ITISTSHVEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVAATD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IVVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPL IQGSALKALE 

       190        200        210        220        230        240 
GEEQWEAKIV ELAEALDTYI PEPERDIDKP FIMPIEDVFS IQGRGTVVTG RVEAGIINVN 

       250        260        270        280        290        300 
DEVEIVGIKE TTKSTCTGVE MFRKLLDEGR AGENIGALLR GTKREDVERG QVLAKPGSIK 

       310        320        330        340        350        360 
PHTTFTSEVY VLSKDEGGRH TPFFKGYRPQ FYFRTTDVTG DVQLPEGVEM VMPGDNVKMT 

       370        380        390 
VTLIAPIAMD EGLRFAIREG GRTVGAGVVA TIVE 

« Hide

References

« Hide 'large scale' references
[1]Qin Q., Zhang Y., Chen X.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
ISME J. 5:274-284(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SM9913.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001796 Genomic DNA. Translation: ADT67197.1.
CP001796 Genomic DNA. Translation: ADT67500.1.
RefSeqYP_004067349.1. NC_014803.1.
YP_004070075.1. NC_014803.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADT67197; ADT67197; PSM_A0242.
ADT67500; ADT67500; PSM_A0548.
GeneID10037138.
10039876.
KEGGpsm:PSM_A0242.
psm:PSM_A0548.
PATRIC45327878. VBIPseSp136886_0867.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMATTIMNDK.

Enzyme and pathway databases

BioCycPSP234831:GH93-250-MONOMER.
PSP234831:GH93-3055-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6RJ40_PSEU9
AccessionPrimary (citable) accession number: E6RJ40
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: July 9, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)