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E6RGE2 (E6RGE2_PSEU9) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phenylalanine--tRNA ligase beta subunit HAMAP-Rule MF_00283

EC=6.1.1.20 HAMAP-Rule MF_00283
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit HAMAP-Rule MF_00283
Gene names
Name:pheT HAMAP-Rule MF_00283 EMBL ADT68084.1
Ordered Locus Names:PSM_A1142 EMBL ADT68084.1
OrganismPseudoalteromonas sp. (strain SM9913) [Complete proteome] [HAMAP] EMBL ADT68084.1
Taxonomic identifier234831 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length795 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). HAMAP-Rule MF_00283 SAAS SAAS020825

Cofactor

Binds 2 magnesium ions per tetramer By similarity. HAMAP-Rule MF_00283 SAAS SAAS020825

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. HAMAP-Rule MF_00283 SAAS SAAS020825

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00283 SAAS SAAS020825.

Sequence similarities

Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. HAMAP-Rule MF_00283

Contains 1 B5 domain. HAMAP-Rule MF_00283

Contains 1 FDX-ACB domain. HAMAP-Rule MF_00283

Contains 1 tRNA-binding domain. HAMAP-Rule MF_00283

Contains B5 domain. SAAS SAAS020825

Contains Bdomain. SAAS SAAS020825

Contains FDX-ACB domain. SAAS SAAS020825

Contains tRNA-binding domain. SAAS SAAS020825

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain39 – 148110tRNA-binding By similarity HAMAP-Rule MF_00283
Domain401 – 47676B5 By similarity HAMAP-Rule MF_00283
Domain701 – 79494FDX-ACB By similarity HAMAP-Rule MF_00283

Sites

Metal binding4541Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4601Magnesium; via carbonyl oxygen By similarity HAMAP-Rule MF_00283
Metal binding4631Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4641Magnesium By similarity HAMAP-Rule MF_00283

Sequences

Sequence LengthMass (Da)Tools
E6RGE2 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: E69207F9EF20DBB9

FASTA79586,535
        10         20         30         40         50         60 
MKFSEKWLRE WVNPAIDTQA LSEQLSMAGL EVDGVEPAAA KFNGVVVGEV VECGQHPDAD 

        70         80         90        100        110        120 
KLRVTKINVG GDELLDIVCG APNCRQGIKV AVATVGAVLP GDFKIKKAKL RGQPSHGMLC 

       130        140        150        160        170        180 
AFDELGISEE GDGIMELPLD APIGADLREY LALDDNIIDV DLTPNRGDCL GIKGLAREVG 

       190        200        210        220        230        240 
VLNSIDVNTL SIPAVTPTIE DKVSIELVND DACPRYLGRV IKGINLDAET PLWMVEKLRR 

       250        260        270        280        290        300 
SGVRSIDPVV DVTNFVLLEL GHPMHAFDLN AIEGGIKVRS ATPGEELVLL DGNTAKLNES 

       310        320        330        340        350        360 
TLVIADHHKA LAIAGIFGGE QSGVTEKTAD ILLESAFFNP VAIAGQARSY GLHTDASHRY 

       370        380        390        400        410        420 
ERGVDFALQH DAMERATALL LEIVGGNAGP IVEAVAADKL PKVTEVRLRR SRLDRVIGHH 

       430        440        450        460        470        480 
IDDAKVTDIL TRLGLDVKFD NDSWSADVPS YRFDIRIEED LIEEVARVYG YNSIPNVAPT 

       490        500        510        520        530        540 
AKLKMTTHDE STVALSRFRN ALVTRGYQEA ITYSFVDPKA QAILHPECNA LVLPHPISIE 

       550        560        570        580        590        600 
MSAMRVSLMP GLLASVAYNQ NRQQPRIRLF EHGLKFISDE SAENGVYQVP VIGGVITGLV 

       610        620        630        640        650        660 
HGEHWVEEKR NVDFYDLKGD VEALLAITND VSRFEIKAEQ SDGLHPGQSA VIYVDGKKVG 

       670        680        690        700        710        720 
FFGALHPQAQ KSLDINNATF VFEIEMSALE KRNLPLAVGV SKFPSNRRDI AILVQDSVKI 

       730        740        750        760        770        780 
GDILNVIGKV GGNQLVDLNL FDVYKGKGIE PNYKSLAIAL TLQAVDRTLE EKDINQVVDN 

       790 
VVAALAEQFN ASLRD 

« Hide

References

[1]"Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
ISME J. 5:274-284(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SM9913.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001796 Genomic DNA. Translation: ADT68084.1.
RefSeqYP_004068235.1. NC_014803.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADT68084; ADT68084; PSM_A1142.
GeneID10038028.
KEGGpsm:PSM_A1142.
PATRIC45329714. VBIPseSp136886_1752.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000292085.
KOK01890.
OMAMKFSEQW.

Enzyme and pathway databases

BioCycPSP234831:GH93-1166-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPMF_00283. Phe_tRNA_synth_beta1.
InterProIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view]
SMARTSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view]
SUPFAMSSF46955. SSF46955. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54991. SSF54991. 1 hit.
SSF56037. SSF56037. 1 hit.
TIGRFAMsTIGR00472. pheT_bact. 1 hit.
PROSITEPS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE6RGE2_PSEU9
AccessionPrimary (citable) accession number: E6RGE2
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: February 19, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)