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E6RGE2

- E6RGE2_PSEU9

UniProt

E6RGE2 - E6RGE2_PSEU9

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Protein
Phenylalanine--tRNA ligase beta subunit
Gene
pheT, PSM_A1142
Organism
Pseudoalteromonas sp. (strain SM9913)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per tetramer By similarity.UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi454 – 4541Magnesium By similarityUniRule annotation
Metal bindingi460 – 4601Magnesium; via carbonyl oxygen By similarityUniRule annotation
Metal bindingi463 – 4631Magnesium By similarityUniRule annotation
Metal bindingi464 – 4641Magnesium By similarityUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. magnesium ion binding Source: UniProtKB-HAMAP
  3. phenylalanine-tRNA ligase activity Source: UniProtKB-HAMAP
  4. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. phenylalanyl-tRNA aminoacylation Source: UniProtKB-HAMAP
  2. tRNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetaseUniRule annotationSAAS annotationsImported, Ligase

Keywords - Biological processi

Protein biosynthesisUniRule annotationSAAS annotations

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotations, MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations, Nucleotide-binding, RNA-binding, tRNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPSP234831:GH93-1166-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phenylalanine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.20UniRule annotation)
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit
Gene namesi
Name:pheTUniRule annotationImported
Ordered Locus Names:PSM_A1142Imported
OrganismiPseudoalteromonas sp. (strain SM9913)Imported
Taxonomic identifieri234831 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
ProteomesiUP000007933: Chromosome I

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits By similarity.UniRule annotationSAAS annotations

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 148110tRNA-binding By similarityUniRule annotation
Add
BLAST
Domaini401 – 47676B5 By similarityUniRule annotation
Add
BLAST
Domaini701 – 79494FDX-ACB By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Contains 1 B5 domain.UniRule annotation
Contains 1 FDX-ACB domain.UniRule annotation
Contains 1 tRNA-binding domain.UniRule annotation
Contains B5 domain.SAAS annotations
Contains Bdomain.SAAS annotations
Contains FDX-ACB domain.SAAS annotations
Contains tRNA-binding domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000292085.
KOiK01890.
OMAiAISSTFC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPiMF_00283. Phe_tRNA_synth_beta1.
InterProiIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamiPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view]
SMARTiSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54991. SSF54991. 1 hit.
SSF56037. SSF56037. 1 hit.
TIGRFAMsiTIGR00472. pheT_bact. 1 hit.
PROSITEiPS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E6RGE2-1 [UniParc]FASTAAdd to Basket

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MKFSEKWLRE WVNPAIDTQA LSEQLSMAGL EVDGVEPAAA KFNGVVVGEV    50
VECGQHPDAD KLRVTKINVG GDELLDIVCG APNCRQGIKV AVATVGAVLP 100
GDFKIKKAKL RGQPSHGMLC AFDELGISEE GDGIMELPLD APIGADLREY 150
LALDDNIIDV DLTPNRGDCL GIKGLAREVG VLNSIDVNTL SIPAVTPTIE 200
DKVSIELVND DACPRYLGRV IKGINLDAET PLWMVEKLRR SGVRSIDPVV 250
DVTNFVLLEL GHPMHAFDLN AIEGGIKVRS ATPGEELVLL DGNTAKLNES 300
TLVIADHHKA LAIAGIFGGE QSGVTEKTAD ILLESAFFNP VAIAGQARSY 350
GLHTDASHRY ERGVDFALQH DAMERATALL LEIVGGNAGP IVEAVAADKL 400
PKVTEVRLRR SRLDRVIGHH IDDAKVTDIL TRLGLDVKFD NDSWSADVPS 450
YRFDIRIEED LIEEVARVYG YNSIPNVAPT AKLKMTTHDE STVALSRFRN 500
ALVTRGYQEA ITYSFVDPKA QAILHPECNA LVLPHPISIE MSAMRVSLMP 550
GLLASVAYNQ NRQQPRIRLF EHGLKFISDE SAENGVYQVP VIGGVITGLV 600
HGEHWVEEKR NVDFYDLKGD VEALLAITND VSRFEIKAEQ SDGLHPGQSA 650
VIYVDGKKVG FFGALHPQAQ KSLDINNATF VFEIEMSALE KRNLPLAVGV 700
SKFPSNRRDI AILVQDSVKI GDILNVIGKV GGNQLVDLNL FDVYKGKGIE 750
PNYKSLAIAL TLQAVDRTLE EKDINQVVDN VVAALAEQFN ASLRD 795
Length:795
Mass (Da):86,535
Last modified:March 8, 2011 - v1
Checksum:iE69207F9EF20DBB9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001796 Genomic DNA. Translation: ADT68084.1.
RefSeqiYP_004068235.1. NC_014803.1.

Genome annotation databases

EnsemblBacteriaiADT68084; ADT68084; PSM_A1142.
GeneIDi10038028.
KEGGipsm:PSM_A1142.
PATRICi45329714. VBIPseSp136886_1752.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001796 Genomic DNA. Translation: ADT68084.1 .
RefSeqi YP_004068235.1. NC_014803.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADT68084 ; ADT68084 ; PSM_A1142 .
GeneIDi 10038028.
KEGGi psm:PSM_A1142.
PATRICi 45329714. VBIPseSp136886_1752.

Phylogenomic databases

HOGENOMi HOG000292085.
KOi K01890.
OMAi AISSTFC.

Enzyme and pathway databases

BioCyci PSP234831:GH93-1166-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPi MF_00283. Phe_tRNA_synth_beta1.
InterProi IPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view ]
Pfami PF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view ]
SMARTi SM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view ]
SUPFAMi SSF46955. SSF46955. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54991. SSF54991. 1 hit.
SSF56037. SSF56037. 1 hit.
TIGRFAMsi TIGR00472. pheT_bact. 1 hit.
PROSITEi PS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913."
    Qin Q.L., Li Y., Zhang Y.J., Zhou Z.M., Zhang W.X., Chen X.L., Zhang X.Y., Zhou B.C., Wang L., Zhang Y.Z.
    ISME J. 5:274-284(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SM9913.

Entry informationi

Entry nameiE6RGE2_PSEU9
AccessioniPrimary (citable) accession number: E6RGE2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: July 9, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi