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E5SIA4 (E5SIA4_TRISP) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:Tsp_04168 EMBL EFV55486.1
OrganismTrichinella spiralis (Trichina worm) [Complete proteome] EMBL EFV55486.1
Taxonomic identifier6334 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Enoplea › Trichocephalida › Trichinellidae › Trichinella

Protein attributes

Sequence length825 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EFV55486.1

Sequences

Sequence LengthMass (Da)Tools
E5SIA4 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 5519A76F4A5F5F9C

FASTA82592,618
        10         20         30         40         50         60 
MNFGITVLRL FSRKLLFSTA CCKFPNKYSS IMSQASLTSF FAPKGSADSE KRTLSKRKSD 

        70         80         90        100        110        120 
LSAVEASNSN PASSVITKDL SKFTEIDEKK RKVQKVDSND DRLENDSVKN ASENAACTSK 

       130        140        150        160        170        180 
KGYTILAKEN SYIDPKPNIL FISKSTQLVK LVKNCFSEQE DVVEPQNYKP DATTYDPECN 

       190        200        210        220        230        240 
ACWRAGEQVP YLAFAYTMKA IENTSSRLEI IRILSNFFQS VIWLNPDDLL PCIYLCLNRL 

       250        260        270        280        290        300 
GPSYEAVELG IAEGTLQKAV AQSTGRSMEK IKADIADKGD LGIVAEMSRN MQRTIFATRP 

       310        320        330        340        350        360 
LTVAGIFAKL NQIAHLSGSS SMNKKLEMVK GLLVSCRDCE ARYLIRCLSG KMRIGLAEQS 

       370        380        390        400        410        420 
LLVALAHAFA FIERKKENKK KLRDDALKEY LDECALIMKT AECPDYGKIV DIALRHGLHA 

       430        440        450        460        470        480 
LPEHCHITPG IPLKPMLAFP SKGIEEVLKR FGSAEFACEW KYDGERAQIH FYDGTVKVFS 

       490        500        510        520        530        540 
RNQENHTGKY PDIVELIPKV LSATNNKNNQ TDPISSCIID SEIVAWDTEN QSILPFQVLS 

       550        560        570        580        590        600 
TRKRKDAESG DVKVNVSVFA FDLLYLNGQS LTTQPFRERR SMLRSLIEEM DGHFFFTKSL 

       610        620        630        640        650        660 
VTNDSDEIGQ FLEEAVKGNC EGLMLKTLDK DATYEIAKRS HKWLKLKKDY LDNTGDTVDL 

       670        680        690        700        710        720 
VVIGGYLGVG RRVGVYGGYL LACYNPTTEE YQSICKIGTG FKDEDLQKQA EFFKQHIISA 

       730        740        750        760        770        780 
PKSYYRYSSS IAPDHWFDPV QVWEVKAADL SISPKHFAAI GIVDDEKGIS LRFPRFIRVR 

       790        800        810        820 
DDKNPEDATT AEEVAEIYYN QESVKNAKAA ATKDVLSDND VDDDF

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References

[1]"The draft genome of the parasitic nematode Trichinella spiralis."
Mitreva M., Jasmer D.P., Zarlenga D.S., Wang Z., Abubucker S., Martin J., Taylor C.M., Yin Y., Fulton L., Minx P., Yang S.P., Warren W.C., Fulton R.S., Bhonagiri V., Zhang X., Hallsworth-Pepin K., Clifton S.W., McCarter J.P. expand/collapse author list , Appleton J., Mardis E.R., Wilson R.K.
Nat. Genet. 43:228-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ISS 195 EMBL EFV55486.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		ABIR02001012 Genomic DNA. Translation: EFV55486.1.
RefSeqXP_003374984.1. XM_003374936.1.

3D structure databases

ProteinModelPortalE5SIA4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaEFV55486; EFV55486; EFV55486.
GeneID10904754.
KEGGtsp:Tsp_04168.

Organism-specific databases

CTD10904754.

Phylogenomic databases

KOK10747.
OMAAQVACLY.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF117018. SSF117018. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE5SIA4_TRISP
AccessionPrimary (citable) accession number: E5SIA4
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info