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Protein

Alpha-amylase

Gene

Tsp_00603

Organism
Trichinella spiralis (Trichina worm)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotationSAAS annotation (EC:3.2.1.1UniRule annotationSAAS annotation)
Gene namesi
ORF Names:Tsp_00603Imported
OrganismiTrichinella spiralis (Trichina worm)Imported
Taxonomic identifieri6334 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaEnopleaDorylaimiaTrichocephalidaTrichinellidaeTrichinella
ProteomesiUP000006823 Componenti: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

InParanoidiE5SA29.
KOiK01176.
OMAiTDPCAIP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

E5SA29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKKRIAVEA SIIPQIYDEE ATVVSAEPSA SGQFSFFREV RNEYSPLGPM
60 70 80 90 100
VKWTPTMQRR ANIKPTVVRE TSSACERKGR VSTVRLCLHC SKIKLALKIK
110 120 130 140 150
KANYTLKQWF SKCGLRSTGG SSADSGHTGK DIKKKQLVNQ DVCLDQILVL
160 170 180 190 200
FFAYSMQKHF TRLIAWLLLV VHWQVVIGDG DKVSDDCFDE LQTDPRRPVA
210 220 230 240 250
VHLFEWKWTD IANECETFLK DTGIGLIQVS PPNEHAVFEH KGDYSWWLRY
260 270 280 290 300
QPVSYLLHSR SGTEKEFIDM VQRCMKVGIK ILVDGVINHM VGANMKGCGS
310 320 330 340 350
GGSSYNSTPF KESFPAVPYG PSDFNDNICN HDIKNYDNAA EVRNCRLVSL
360 370 380 390 400
VDLKLSKVEV QQKIADYLNH LIDIGVAGFR IDAAKHMWPD DIRNILKRVN
410 420 430 440 450
HLNPAYYPKD KCAFVFHEVI DQGAEAIQGS EYVDFGRITN FRYGLDLSAA
460 470 480 490 500
VMRNENFLYF KNFGPEWNYW KSHDVLVFVD NHDNQRGSGG GGKVLTYKTP
510 520 530 540 550
KMYKLAVSFM LAWNYGIPRL MSSYYFNGHD MGPPSFGRPD FKTKSPTFTP
560 570 580 590 600
DGLCNQSSGW VCEHRWHEIK RMTLFSASVA GLPNTNIISD HHRIAFSRGS
610 620 630 640 650
NGFYALNNDP HNAWVVQVQT SLPAGFYCDF MTGSVTNKGC SGKTIEVTTD
660 670 680 690 700
GKVKLVVEPE TAVAISVASK LTLPPSYKRT VVLIHFPTIE GQNVFIRGGV
710 720 730 740 750
HSSHRKGCKT DVIDTPCSIP IIHIEDVQSS WKKFIHWRSD DYFLDWSTGD
760 770 780 790 800
NAEGSSTIGT PLAWSTNIKN QVGYQWENKY GEHYWFMNVL MDCNRTESGW
810 820 830 840 850
FEFQSAMDSS NLVESAIKQT KCNGDGGVAE PPFTTTFHAA RCGFVNVFQF
860 870 880 890 900
NTSACTIEKR LSMQYIAMLL SFTVIIVIIH AHETDAAVMH FCFTNQIIVN
910 920 930 940 950
LVILRLSVLI FCGIHFLFIA FYDVILNICY DSGVVMVAFV LMRNEGNSTH

VYIVYM
Length:956
Mass (Da):108,022
Last modified:March 7, 2011 - v1
Checksum:i4973A99B515B61CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABIR02000742 Genomic DNA. Translation: EFV58315.1.
RefSeqiXP_003376440.1. XM_003376392.1.

Genome annotation databases

EnsemblMetazoaiEFV58315; EFV58315; EFV58315.
GeneIDi10901925.
KEGGitsp:Tsp_00603.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABIR02000742 Genomic DNA. Translation: EFV58315.1.
RefSeqiXP_003376440.1. XM_003376392.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiEFV58315; EFV58315; EFV58315.
GeneIDi10901925.
KEGGitsp:Tsp_00603.

Organism-specific databases

CTDi10901925.

Phylogenomic databases

InParanoidiE5SA29.
KOiK01176.
OMAiTDPCAIP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ISS 195Imported.

Entry informationi

Entry nameiE5SA29_TRISP
AccessioniPrimary (citable) accession number: E5SA29
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2011
Last sequence update: March 7, 2011
Last modified: March 3, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.