Skip Header

Contribute Send feedback
Read comments (?) or add your own

E5S7V1 (E5S7V1_TRISP) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
40S ribosomal protein S2 EMBL EFV59129.1
Gene names
ORF Names:Tsp_07789 EMBL EFV59129.1
OrganismTrichinella spiralis (Trichina worm) [Complete proteome] EMBL EFV59129.1
Taxonomic identifier6334 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Enoplea › Trichocephalida › Trichinellidae › Trichinella

Protein attributes

Sequence length941 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S5P family. RuleBase RU003823

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EFV59129.1

Sequences

Sequence LengthMass (Da)Tools
E5S7V1 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: 3E4187827B620FF5

FASTA941102,848
        10         20         30         40         50         60 
MQPENWLRTR LPAFAGGAFE CVELLKVTST VLENSESRCL AGQNRFCNWY SMNVSSAGCS 

        70         80         90        100        110        120 
RTSNESRCLS QIRLHCGLKK HCAHSMAVTP GMENLAITGS VTTSLHSISR LGHVVQERLD 

       130        140        150        160        170        180 
PSRTDQKPFV GLAFKLEAGK FGQLTYFRIY QGRMGRGSAI VNSRTWKRTR VQRLVRMHAN 

       190        200        210        220        230        240 
RMEDIEEAYA GDICATFGLE CASGDTFLSD ASRKLALENI YVPKPVVSMA IKPKAKKDAD 

       250        260        270        280        290        300 
NFLKALNRFC KEDPTFHREY NVEAKEVIVS GMGELQLEVY AQRMKAEYNC EVELGKPKVA 

       310        320        330        340        350        360 
FRETLTEKCA FDYWHRKQTG GHGQYGRVIG VCEPLPPNQN LDLIFTDECI GTNVPKQFMP 

       370        380        390        400        410        420 
AIDKGFREAC QKGPLIGAPV TGIRFRLKDG AHHIVDSSEI AFILTAKYAM NDVFSDGRWH 

       430        440        450        460        470        480 
IIEPVMKVEA TCPTEFQGSV MAALSKRQAV IISTDLIENF FSVVCEAPLN CMFGFVTELR 

       490        500        510        520        530        540 
SLTEGKGEYS MEYSRYAPLK PEIAEQLISE SSRAQSEVSN RTSKRLKGTC YFECFARCPS 

       550        560        570        580        590        600 
FQLLINTPLY LFAHICRQRV SALSFVVKPK FLISWLFLYS VFCVKPRQSY IHMTDRGGFH 

       610        620        630        640        650        660 
GGFGTSAFGE ATAGFGDAGA GFGDPGVGFG EAGFGSAGGF GDSAGGGFSG SGFRGGSFAY 

       670        680        690        700        710        720 
SRGGSSAGFG RPSFYGSGRG GRGGRGRGSR GRGRGGRGGA RGKEGAKEWI PVTKLGRLVK 

       730        740        750        760        770        780 
DGKIKSLEEI YLHSLPIKEF EIIDFLLGEQ LKDDVLKIMP VQKQTRAGQR TRFKAFVAIG 

       790        800        810        820        830        840 
DYNGHVGLGV KCSKEVATAI RGAIIAAKLS VIPVRRGYWG NKIGKPHTVP CKVSKMLRSV 

       850        860        870        880        890        900 
TGKCGSVLVR LIPAPKGTGI VSAPVPKKLL QMAGIDDCYT CAKGSTGTLG NFAKATYAAI 

       910        920        930        940 
AATYSYLTPD LWKGTALSRS PYQAFAEFLK SNPLSVAQEK D

« Hide

References

[1]"The draft genome of the parasitic nematode Trichinella spiralis."
Mitreva M., Jasmer D.P., Zarlenga D.S., Wang Z., Abubucker S., Martin J., Taylor C.M., Yin Y., Fulton L., Minx P., Yang S.P., Warren W.C., Fulton R.S., Bhonagiri V., Zhang X., Hallsworth-Pepin K., Clifton S.W., McCarter J.P. expand/collapse author list , Appleton J., Mardis E.R., Wilson R.K.
Nat. Genet. 43:228-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ISS 195 EMBL EFV59129.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		ABIR02000673 Genomic DNA. Translation: EFV59129.1.
RefSeqXP_003381255.1. XM_003381207.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaEFV59129; EFV59129; EFV59129.
GeneID10903697.
KEGGtsp:Tsp_07789.

Organism-specific databases

CTD10903697.

Family and domain databases

Gene3D3.30.160.20. 1 hit.
3.30.230.10. 2 hits.
3.30.70.240. 1 hit.
InterProIPR014720. dsRNA-bd-like_dom.
IPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005711. Ribosomal_S5_euk/arc.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
IPR005517. Transl_elong_EFG/EF2_IV.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00679. EFG_C. 1 hit.
PF03764. EFG_IV. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SMARTSM00838. EFG_C. 1 hit.
SM00889. EFG_IV. 1 hit.
[Graphical view]
SUPFAMSSF54980. EFG_III_V. 2 hits.
SSF54211. Ribosomal_S5_D2-typ_fold. 2 hits.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR01020. rpsE_arch. 1 hit.
PROSITEPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE5S7V1_TRISP
AccessionPrimary (citable) accession number: E5S7V1
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: May 1, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info