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E5S760

- E5S760_TRISP

UniProt

E5S760 - E5S760_TRISP

Protein
Submitted name:

DNA ligase 4

Gene

Tsp_10986

Organism
Trichinella spiralis (Trichina worm)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (08 Mar 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase 4Imported
    Gene namesi
    ORF Names:Tsp_10986Imported
    OrganismiTrichinella spiralis (Trichina worm)Imported
    Taxonomic identifieri6334 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaEnopleaDorylaimiaTrichocephalidaTrichinellidaeTrichinella
    ProteomesiUP000006823: Unassembled WGS sequence

    Family & Domainsi

    Phylogenomic databases

    KOiK10777.
    OMAiIALMENY.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR021536. DNA_ligase_IV_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF11411. DNA_ligase_IV. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 2 hits.
    SSF52113. SSF52113. 2 hits.
    PROSITEiPS50172. BRCT. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E5S760-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIFSGIDFTS SYGSTPFVGN LTQFIHGAFE NHVRNCILDG EMIAWDRTAK    50
    RFVGKGEHVD VKGLKFDSPL NPCYMVFDCL LLNDRPLAGL PLSERLKQLR 100
    SAVRDMPERM QIVDQQLVDS ADQVIELLNE TVGRGEEGIM PDYINGLVDD 150
    LDVLIVGGYF GTGRRSNLLS HFMIALMENY DKKIIETVDV DEQEFQFVVS 200
    TTFADCDFST PRFVALGRVG SGYSLKELYD FNAKLVQLRL KRGQPPPWLK 250
    LGVEKPEVYI HPEQSTIVQV KAAQIVTSGQ FPLGFTLRFP RVQAIRHDKT 300
    WRDCMTVEQF LNFKDLSADC TSKRLAEMKN DNDDQIMNLK TVSKKPKRKA 350
    IVAADRRCRV EAMKNLDQSK RMRKLKPISD IFQGRELCIL NGNDTFTKEN 400
    LEGKVVELGG TVVQHPVAGR QTVKVKSVVR ASTVDVLKLS WLIRCIQTNS 450
    FIQWTPKDML LTTATMKRHF KRNFDQYGDS YTDPVDSETL HDLLTTVPVE 500
    KTDVDDSKSQ KFLSTISYKY GIFLNCTIYL DLYDDLLSPL RRRIALSALD 550
    RYELLLYEFR ANIVDTLTDS LTHTLCSAFV DFVQLQRLIL LFSQSSIKLV 600
    DLSRLDDLLR FKSDFNANFH IVTESWVTHC IGEFAIVDES LHSVRTSGES 650
    HPAIIDEEEV EEGDDVINEN PSSSLETLPL FFYSFTGNFS TEEEDEEQKL 700
    Length:700
    Mass (Da):79,757
    Last modified:March 8, 2011 - v1
    Checksum:iB795E01487DA5CA9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABIR02000625 Genomic DNA. Translation: EFV59381.1.
    RefSeqiXP_003381011.1. XM_003380963.1.

    Genome annotation databases

    EnsemblMetazoaiEFV59381; EFV59381; EFV59381.
    GeneIDi10903450.
    KEGGitsp:Tsp_10986.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABIR02000625 Genomic DNA. Translation: EFV59381.1 .
    RefSeqi XP_003381011.1. XM_003380963.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai EFV59381 ; EFV59381 ; EFV59381 .
    GeneIDi 10903450.
    KEGGi tsp:Tsp_10986.

    Organism-specific databases

    CTDi 10903450.

    Phylogenomic databases

    KOi K10777.
    OMAi IALMENY.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR021536. DNA_ligase_IV_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF11411. DNA_ligase_IV. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 2 hits.
    SSF52113. SSF52113. 2 hits.
    PROSITEi PS50172. BRCT. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ISS 195Imported.

    Entry informationi

    Entry nameiE5S760_TRISP
    AccessioniPrimary (citable) accession number: E5S760
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 8, 2011
    Last sequence update: March 8, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3