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E5S760 (E5S760_TRISP) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase 4 EMBL EFV59381.1
Gene names
ORF Names:Tsp_10986 EMBL EFV59381.1
OrganismTrichinella spiralis (Trichina worm) [Complete proteome] EMBL EFV59381.1
Taxonomic identifier6334 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Enoplea › Trichocephalida › Trichinellidae › Trichinella

Protein attributes

Sequence length700 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EFV59381.1

Ontologies

Keywords
   Molecular functionLigase EMBL EFV59381.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E5S760 [UniParc].

Last modified March 8, 2011. Version 1.
Checksum: B795E01487DA5CA9

FASTA70079,757
        10         20         30         40         50         60 
MIFSGIDFTS SYGSTPFVGN LTQFIHGAFE NHVRNCILDG EMIAWDRTAK RFVGKGEHVD 

        70         80         90        100        110        120 
VKGLKFDSPL NPCYMVFDCL LLNDRPLAGL PLSERLKQLR SAVRDMPERM QIVDQQLVDS 

       130        140        150        160        170        180 
ADQVIELLNE TVGRGEEGIM PDYINGLVDD LDVLIVGGYF GTGRRSNLLS HFMIALMENY 

       190        200        210        220        230        240 
DKKIIETVDV DEQEFQFVVS TTFADCDFST PRFVALGRVG SGYSLKELYD FNAKLVQLRL 

       250        260        270        280        290        300 
KRGQPPPWLK LGVEKPEVYI HPEQSTIVQV KAAQIVTSGQ FPLGFTLRFP RVQAIRHDKT 

       310        320        330        340        350        360 
WRDCMTVEQF LNFKDLSADC TSKRLAEMKN DNDDQIMNLK TVSKKPKRKA IVAADRRCRV 

       370        380        390        400        410        420 
EAMKNLDQSK RMRKLKPISD IFQGRELCIL NGNDTFTKEN LEGKVVELGG TVVQHPVAGR 

       430        440        450        460        470        480 
QTVKVKSVVR ASTVDVLKLS WLIRCIQTNS FIQWTPKDML LTTATMKRHF KRNFDQYGDS 

       490        500        510        520        530        540 
YTDPVDSETL HDLLTTVPVE KTDVDDSKSQ KFLSTISYKY GIFLNCTIYL DLYDDLLSPL 

       550        560        570        580        590        600 
RRRIALSALD RYELLLYEFR ANIVDTLTDS LTHTLCSAFV DFVQLQRLIL LFSQSSIKLV 

       610        620        630        640        650        660 
DLSRLDDLLR FKSDFNANFH IVTESWVTHC IGEFAIVDES LHSVRTSGES HPAIIDEEEV 

       670        680        690        700 
EEGDDVINEN PSSSLETLPL FFYSFTGNFS TEEEDEEQKL

« Hide

References

[1]"The draft genome of the parasitic nematode Trichinella spiralis."
Mitreva M., Jasmer D.P., Zarlenga D.S., Wang Z., Abubucker S., Martin J., Taylor C.M., Yin Y., Fulton L., Minx P., Yang S.P., Warren W.C., Fulton R.S., Bhonagiri V., Zhang X., Hallsworth-Pepin K., Clifton S.W., McCarter J.P. expand/collapse author list , Appleton J., Mardis E.R., Wilson R.K.
Nat. Genet. 43:228-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ISS 195 EMBL EFV59381.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		ABIR02000625 Genomic DNA. Translation: EFV59381.1.
RefSeqXP_003381011.1. XM_003380963.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaEFV59381; EFV59381; EFV59381.
GeneID10903450.
KEGGtsp:Tsp_10986.

Organism-specific databases

CTD10903450.

Phylogenomic databases

KOK10777.
OMAIALMENY.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR021536. DNA_ligase_IV.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF52113. BRCT. 2 hits.
SSF50249. Nucleic_acid_OB. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE5S760_TRISP
AccessionPrimary (citable) accession number: E5S760
Entry history
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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