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Protein
Submitted name:

DNA ligase 4

Gene

Tsp_10986

Organism
Trichinella spiralis (Trichina worm)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase 4Imported
Gene namesi
ORF Names:Tsp_10986Imported
OrganismiTrichinella spiralis (Trichina worm)Imported
Taxonomic identifieri6334 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaEnopleaDorylaimiaTrichocephalidaTrichinellidaeTrichinella
ProteomesiUP000006823 Componenti: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

InParanoidiE5S760.
KOiK10777.
OMAiATIFKEY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR021536. DNA_ligase_IV_dom.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E5S760-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIFSGIDFTS SYGSTPFVGN LTQFIHGAFE NHVRNCILDG EMIAWDRTAK
60 70 80 90 100
RFVGKGEHVD VKGLKFDSPL NPCYMVFDCL LLNDRPLAGL PLSERLKQLR
110 120 130 140 150
SAVRDMPERM QIVDQQLVDS ADQVIELLNE TVGRGEEGIM PDYINGLVDD
160 170 180 190 200
LDVLIVGGYF GTGRRSNLLS HFMIALMENY DKKIIETVDV DEQEFQFVVS
210 220 230 240 250
TTFADCDFST PRFVALGRVG SGYSLKELYD FNAKLVQLRL KRGQPPPWLK
260 270 280 290 300
LGVEKPEVYI HPEQSTIVQV KAAQIVTSGQ FPLGFTLRFP RVQAIRHDKT
310 320 330 340 350
WRDCMTVEQF LNFKDLSADC TSKRLAEMKN DNDDQIMNLK TVSKKPKRKA
360 370 380 390 400
IVAADRRCRV EAMKNLDQSK RMRKLKPISD IFQGRELCIL NGNDTFTKEN
410 420 430 440 450
LEGKVVELGG TVVQHPVAGR QTVKVKSVVR ASTVDVLKLS WLIRCIQTNS
460 470 480 490 500
FIQWTPKDML LTTATMKRHF KRNFDQYGDS YTDPVDSETL HDLLTTVPVE
510 520 530 540 550
KTDVDDSKSQ KFLSTISYKY GIFLNCTIYL DLYDDLLSPL RRRIALSALD
560 570 580 590 600
RYELLLYEFR ANIVDTLTDS LTHTLCSAFV DFVQLQRLIL LFSQSSIKLV
610 620 630 640 650
DLSRLDDLLR FKSDFNANFH IVTESWVTHC IGEFAIVDES LHSVRTSGES
660 670 680 690 700
HPAIIDEEEV EEGDDVINEN PSSSLETLPL FFYSFTGNFS TEEEDEEQKL
Length:700
Mass (Da):79,757
Last modified:March 7, 2011 - v1
Checksum:iB795E01487DA5CA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABIR02000625 Genomic DNA. Translation: EFV59381.1.
RefSeqiXP_003381011.1. XM_003380963.1.

Genome annotation databases

EnsemblMetazoaiEFV59381; EFV59381; EFV59381.
GeneIDi10903450.
KEGGitsp:Tsp_10986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABIR02000625 Genomic DNA. Translation: EFV59381.1.
RefSeqiXP_003381011.1. XM_003380963.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiEFV59381; EFV59381; EFV59381.
GeneIDi10903450.
KEGGitsp:Tsp_10986.

Organism-specific databases

CTDi10903450.

Phylogenomic databases

InParanoidiE5S760.
KOiK10777.
OMAiATIFKEY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR021536. DNA_ligase_IV_dom.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ISS 195Imported.

Entry informationi

Entry nameiE5S760_TRISP
AccessioniPrimary (citable) accession number: E5S760
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2011
Last sequence update: March 7, 2011
Last modified: January 6, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.