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Protein
Submitted name:

DNA ligase 4

Gene

Tsp_10986

Organism
Trichinella spiralis (Trichina worm)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase 4Imported
Gene namesi
ORF Names:Tsp_10986Imported
OrganismiTrichinella spiralis (Trichina worm)Imported
Taxonomic identifieri6334 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaEnopleaDorylaimiaTrichinellidaTrichinellidaeTrichinella
Proteomesi

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini65 – 178DNA_LIGASE_A3InterPro annotationAdd BLAST114
Domaini377 – 459BRCTInterPro annotationAdd BLAST83

Phylogenomic databases

eggNOGiKOG0966 Eukaryota
COG1793 LUCA
InParanoidiE5S760
KOiK10777
OMAiKSIICAN
OrthoDBiEOG091G03K0

Family and domain databases

Gene3Di3.40.50.10190, 2 hits
InterProiView protein in InterPro
IPR001357 BRCT_dom
IPR036420 BRCT_dom_sf
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR021536 DNA_ligase_IV_dom
IPR029710 LIG4
IPR012340 NA-bd_OB-fold
PANTHERiPTHR10459:SF7 PTHR10459:SF7, 2 hits
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF11411 DNA_ligase_IV, 1 hit
SUPFAMiSSF50249 SSF50249, 2 hits
SSF52113 SSF52113, 2 hits
PROSITEiView protein in PROSITE
PS50172 BRCT, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

E5S760-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIFSGIDFTS SYGSTPFVGN LTQFIHGAFE NHVRNCILDG EMIAWDRTAK
60 70 80 90 100
RFVGKGEHVD VKGLKFDSPL NPCYMVFDCL LLNDRPLAGL PLSERLKQLR
110 120 130 140 150
SAVRDMPERM QIVDQQLVDS ADQVIELLNE TVGRGEEGIM PDYINGLVDD
160 170 180 190 200
LDVLIVGGYF GTGRRSNLLS HFMIALMENY DKKIIETVDV DEQEFQFVVS
210 220 230 240 250
TTFADCDFST PRFVALGRVG SGYSLKELYD FNAKLVQLRL KRGQPPPWLK
260 270 280 290 300
LGVEKPEVYI HPEQSTIVQV KAAQIVTSGQ FPLGFTLRFP RVQAIRHDKT
310 320 330 340 350
WRDCMTVEQF LNFKDLSADC TSKRLAEMKN DNDDQIMNLK TVSKKPKRKA
360 370 380 390 400
IVAADRRCRV EAMKNLDQSK RMRKLKPISD IFQGRELCIL NGNDTFTKEN
410 420 430 440 450
LEGKVVELGG TVVQHPVAGR QTVKVKSVVR ASTVDVLKLS WLIRCIQTNS
460 470 480 490 500
FIQWTPKDML LTTATMKRHF KRNFDQYGDS YTDPVDSETL HDLLTTVPVE
510 520 530 540 550
KTDVDDSKSQ KFLSTISYKY GIFLNCTIYL DLYDDLLSPL RRRIALSALD
560 570 580 590 600
RYELLLYEFR ANIVDTLTDS LTHTLCSAFV DFVQLQRLIL LFSQSSIKLV
610 620 630 640 650
DLSRLDDLLR FKSDFNANFH IVTESWVTHC IGEFAIVDES LHSVRTSGES
660 670 680 690 700
HPAIIDEEEV EEGDDVINEN PSSSLETLPL FFYSFTGNFS TEEEDEEQKL
Length:700
Mass (Da):79,757
Last modified:March 8, 2011 - v1
Checksum:iB795E01487DA5CA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABIR02000625 Genomic DNA Translation: EFV59381.1
RefSeqiXP_003381011.1, XM_003380963.1

Genome annotation databases

EnsemblMetazoaiEFV59381; EFV59381; EFV59381
GeneIDi10903450
KEGGitsp:Tsp_10986

Entry informationi

Entry nameiE5S760_TRISP
AccessioniPrimary (citable) accession number: E5S760
Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: March 28, 2018
This is version 37 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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