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E5S760

- E5S760_TRISP

UniProt

E5S760 - E5S760_TRISP

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Protein
Submitted name: DNA ligase 4
Gene
Tsp_10986
Organism
Trichinella spiralis (Trichina worm)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase 4Imported
Gene namesi
ORF Names:Tsp_10986Imported
OrganismiTrichinella spiralis (Trichina worm)Imported
Taxonomic identifieri6334 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaEnopleaDorylaimiaTrichocephalidaTrichinellidaeTrichinella
ProteomesiUP000006823: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

KOiK10777.
OMAiIALMENY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR021536. DNA_ligase_IV_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E5S760-1 [UniParc]FASTAAdd to Basket

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MIFSGIDFTS SYGSTPFVGN LTQFIHGAFE NHVRNCILDG EMIAWDRTAK    50
RFVGKGEHVD VKGLKFDSPL NPCYMVFDCL LLNDRPLAGL PLSERLKQLR 100
SAVRDMPERM QIVDQQLVDS ADQVIELLNE TVGRGEEGIM PDYINGLVDD 150
LDVLIVGGYF GTGRRSNLLS HFMIALMENY DKKIIETVDV DEQEFQFVVS 200
TTFADCDFST PRFVALGRVG SGYSLKELYD FNAKLVQLRL KRGQPPPWLK 250
LGVEKPEVYI HPEQSTIVQV KAAQIVTSGQ FPLGFTLRFP RVQAIRHDKT 300
WRDCMTVEQF LNFKDLSADC TSKRLAEMKN DNDDQIMNLK TVSKKPKRKA 350
IVAADRRCRV EAMKNLDQSK RMRKLKPISD IFQGRELCIL NGNDTFTKEN 400
LEGKVVELGG TVVQHPVAGR QTVKVKSVVR ASTVDVLKLS WLIRCIQTNS 450
FIQWTPKDML LTTATMKRHF KRNFDQYGDS YTDPVDSETL HDLLTTVPVE 500
KTDVDDSKSQ KFLSTISYKY GIFLNCTIYL DLYDDLLSPL RRRIALSALD 550
RYELLLYEFR ANIVDTLTDS LTHTLCSAFV DFVQLQRLIL LFSQSSIKLV 600
DLSRLDDLLR FKSDFNANFH IVTESWVTHC IGEFAIVDES LHSVRTSGES 650
HPAIIDEEEV EEGDDVINEN PSSSLETLPL FFYSFTGNFS TEEEDEEQKL 700
Length:700
Mass (Da):79,757
Last modified:March 8, 2011 - v1
Checksum:iB795E01487DA5CA9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABIR02000625 Genomic DNA. Translation: EFV59381.1.
RefSeqiXP_003381011.1. XM_003380963.1.

Genome annotation databases

EnsemblMetazoaiEFV59381; EFV59381; EFV59381.
GeneIDi10903450.
KEGGitsp:Tsp_10986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABIR02000625 Genomic DNA. Translation: EFV59381.1 .
RefSeqi XP_003381011.1. XM_003380963.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai EFV59381 ; EFV59381 ; EFV59381 .
GeneIDi 10903450.
KEGGi tsp:Tsp_10986.

Organism-specific databases

CTDi 10903450.

Phylogenomic databases

KOi K10777.
OMAi IALMENY.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR021536. DNA_ligase_IV_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 2 hits.
SSF52113. SSF52113. 2 hits.
PROSITEi PS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ISS 195Imported.

Entry informationi

Entry nameiE5S760_TRISP
AccessioniPrimary (citable) accession number: E5S760
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome

External Data

Dasty 3