E4ZA01 (E4ZA01_NEIL0) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5 HAMAP-Rule MF_01307

Gene names

Name:	rpsE HAMAP-Rule MF_01307 EMBL CBN86346.1
Ordered Locus Names:	NLA_1020 EMBL CBN86346.1

Organism

Neisseria lactamica (strain 020-06) [Complete proteome] [HAMAP]

Taxonomic identifier

489653 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Neisseriales › Neisseriaceae › Neisseria › Neisseria lactamica

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307 With S4 and S12 plays an important role in translational accuracy By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. RuleBase RU003823 HAMAP-Rule MF_01307 Contains 1 S5 DRBM domain. SAAS SAAS005712 HAMAP-Rule MF_01307

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS005712 HAMAP-Rule MF_01307
Molecular function	Ribonucleoprotein Ribosomal protein SAAS SAAS005712 RuleBase RU003823 HAMAP-Rule MF_01307 EMBL CBN86346.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	13 – 76	64	S5 DRBM By similarity HAMAP-Rule MF_01307

Sequences

	Sequence		Length	Mass (Da)
	E4ZA01 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: AE6791C423D5E76B	FASTA	172	18,302
	10 20 30 40 50 60 MAKHEIEERG DGLIEKMVAV NRVTKVVKGG RIMAFSALTV VGDGDGRIGM GKGKSKEVPV 70 80 90 100 110 120 AVQKAMDQAR RSMIKVPLKN GTIHHEVIGR HGATKVFMQP AKEGSGVKAG GPMRLVFDAM 130 140 150 160 170 GIHNISAKVH GSTNPYNIVR ATLDGLSKLY TPADIAAKRG LTVEDILGAN HD

References

[1]

"Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06." Bennett J.S., Bentley S.D., Vernikos G.S., Quail M.A., Cherevach I., White B., Parkhill J., Maiden M.C. BMC Genomics 11:652-652(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 020-06 EMBL CBN86346.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN995097 Genomic DNA. Translation: CBN86346.1.
RefSeq	YP_004047742.1. NC_014752.1.
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	E4ZA01.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBN86346; CBN86346; NLA_1020.
GeneID	10007187.
KEGG	nla:NLA_1020.
PATRIC	45298044. VBINeiLac170077_0122.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000072595.
KO	K02988.
Enzyme and pathway databases
BioCyc	NLAC489653:GJ91-110-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_B. Ribosomal_S5_B.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E4ZA01_NEIL0

Accession

Primary (citable) accession number: E4ZA01

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)