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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

REQ_26630

Organism
Rhodococcus equi (strain 103S) (Corynebacterium equi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciREQU685727:GHKP-2566-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:REQ_26630Imported
OrganismiRhodococcus equi (strain 103S) (Corynebacterium equi)Imported
Taxonomic identifieri685727 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000006892: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4WID1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSAAPTPPAP MLATLGKPPA GEGWAFEMKW DGQRAVTDVR DGGVRLFSRN
60 70 80 90 100
GNDITTAFPE LTGPIAEAVD DHAVVLDGEI VALDAKGRPS FGRLQRRMHV
110 120 130 140 150
ARPTTQLRND FPVIYYAFDV LALDGESTIG RTYLERRRML DDLRISGRQV
160 170 180 190 200
QVPPFWTGVD GHRMLDLARE HHLEGVVAKR VDSTYRPGRR APEWIKTPLR
210 220 230 240 250
KNTEAVVVGW VDGSGAARHG VGSLLLGAYD DDGRLVYIGH VGTGFTTALR
260 270 280 290 300
RSLREQLATL ERPASPLAAP PPSRDAKDAH WVEPQLVGDV EYREYTGGSL
310 320
RHPSWKGLRD DKTPAEVDLP GRH
Length:323
Mass (Da):35,612
Last modified:February 8, 2011 - v1
Checksum:iD8208804CE11A347
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN563149 Genomic DNA. Translation: CBH48688.1.
RefSeqiYP_004007369.1. NC_014659.1.

Genome annotation databases

EnsemblBacteriaiCBH48688; CBH48688; REQ_26630.
GeneIDi9965230.
KEGGireq:REQ_26630.
PATRICi42662761. VBIRhoEqu141084_2659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN563149 Genomic DNA. Translation: CBH48688.1.
RefSeqiYP_004007369.1. NC_014659.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBH48688; CBH48688; REQ_26630.
GeneIDi9965230.
KEGGireq:REQ_26630.
PATRICi42662761. VBIRhoEqu141084_2659.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciREQU685727:GHKP-2566-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 103SImported.

Entry informationi

Entry nameiE4WID1_RHOE1
AccessioniPrimary (citable) accession number: E4WID1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: February 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.