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E4WID1 (E4WID1_RHOE1) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:REQ_26630 EMBL CBH48688.1
OrganismRhodococcus equi (strain 103S) (Corynebacterium equi) [Complete proteome] [HAMAP] EMBL CBH48688.1
Taxonomic identifier685727 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus

Protein attributes

Sequence length323 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
E4WID1 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: D8208804CE11A347

FASTA32335,612
        10         20         30         40         50         60 
MSAAPTPPAP MLATLGKPPA GEGWAFEMKW DGQRAVTDVR DGGVRLFSRN GNDITTAFPE 

        70         80         90        100        110        120 
LTGPIAEAVD DHAVVLDGEI VALDAKGRPS FGRLQRRMHV ARPTTQLRND FPVIYYAFDV 

       130        140        150        160        170        180 
LALDGESTIG RTYLERRRML DDLRISGRQV QVPPFWTGVD GHRMLDLARE HHLEGVVAKR 

       190        200        210        220        230        240 
VDSTYRPGRR APEWIKTPLR KNTEAVVVGW VDGSGAARHG VGSLLLGAYD DDGRLVYIGH 

       250        260        270        280        290        300 
VGTGFTTALR RSLREQLATL ERPASPLAAP PPSRDAKDAH WVEPQLVGDV EYREYTGGSL 

       310        320 
RHPSWKGLRD DKTPAEVDLP GRH 

« Hide

References

[1]"The genome of a pathogenic rhodococcus: cooptive virulence underpinned by key gene acquisitions."
Letek M., Gonzalez P., Macarthur I., Rodriguez H., Freeman T.C., Valero-Rello A., Blanco M., Buckley T., Cherevach I., Fahey R., Hapeshi A., Holdstock J., Leadon D., Navas J., Ocampo A., Quail M.A., Sanders M., Scortti M.M. expand/collapse author list , Prescott J.F., Fogarty U., Meijer W.G., Parkhill J., Bentley S.D., Vazquez-Boland J.A.
PLoS Genet. 6:E1001145-E1001145(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 103S.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN563149 Genomic DNA. Translation: CBH48688.1.
RefSeqYP_004007369.1. NC_014659.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH48688; CBH48688; REQ_26630.
GeneID9965230.
KEGGreq:REQ_26630.
PATRIC42662761. VBIRhoEqu141084_2659.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.

Enzyme and pathway databases

BioCycREQU685727:GHKP-2566-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4WID1_RHOE1
AccessionPrimary (citable) accession number: E4WID1
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: October 16, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)