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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

REQ_10780

Organism
Rhodococcus equi (strain 103S) (Corynebacterium equi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciREQU685727:GHKP-1039-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:REQ_10780Imported
OrganismiRhodococcus equi (strain 103S) (Corynebacterium equi)Imported
Taxonomic identifieri685727 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000006892: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4WE24-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTRTIDGRR VAVSRLDKVL YPATANGPAV TKGEVIDYYE AIAPAMLPHV
60 70 80 90 100
VDRPVTRKRW PNGVDEPSFF EKNLAASAPD WLTRHAVHHK DRAVRYPVID
110 120 130 140 150
SAAALVWIGQ QAALEVHVPQ WRFVDGEPGP ATRLVFDLDP GDGVGLAECA
160 170 180 190 200
RVAAAVRDLV ASLGWTAYPV TSGSKGIHVY VPLDRTLAPG GASTVARKVA
210 220 230 240 250
TSLEQLHPDL VTATMAKSVR AGRVFVDWSQ NNAAKTTIAP YSLRGRAAPT
260 270 280 290 300
VAAPRTWDEL EDPGLRHLRF DEVLDRFRRD GDLIADLDPR MDALTEYRRK
310 320 330 340 350
RDADRTPEPI PQTAAEGGEG NSFVIQEHHA RRLHYDFRLE RDGVMVSWAV
360 370 380 390 400
PRGLPTSSKE NRLAVHTEDH PLEYASFAGS IPKGEYGGGT VSIWDAGTYE
410 420 430 440 450
PEKWRDDEVI VRLSGQRAQG RYALIRTEGD QWLMHLMKDD GGATDLPRGL
460 470 480 490 500
APMLATAGTL DGLEPEQWAF EGKWDGIRLI VEFDGTTVRL RGRAGNDVTE
510 520 530 540 550
RYPALQALAA ALDGHRVVLD GEVVSLDSHG NTSFPALQAG GVPQFRAFDI
560 570 580 590 600
LYLDGVSLLR KRYDDRRRIL DALAAATVGL DVPPQLTGSV ADVRAQSKDL
610 620 630 640 650
EGVVAKRRDS IYLPGRRGTA WIKTKNWLTQ EVVIGGWRRG RGAREAGIGS
660 670 680 690 700
LLLGVPDKAG LRYVGRVGTG FSERERERLI ELLGPLERES SPFAGEVPDV
710 720 730 740
DRDTVWVTPS VVGEVRYRER TDAGRLRHPA WRGLRDDKSP DDVRIE
Length:746
Mass (Da):82,267
Last modified:February 8, 2011 - v1
Checksum:i5AB60441B72DB5AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN563149 Genomic DNA. Translation: CBH47178.1.
RefSeqiYP_004005863.1. NC_014659.1.

Genome annotation databases

EnsemblBacteriaiCBH47178; CBH47178; REQ_10780.
GeneIDi9963974.
KEGGireq:REQ_10780.
PATRICi42659553. VBIRhoEqu141084_1076.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN563149 Genomic DNA. Translation: CBH47178.1.
RefSeqiYP_004005863.1. NC_014659.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBH47178; CBH47178; REQ_10780.
GeneIDi9963974.
KEGGireq:REQ_10780.
PATRICi42659553. VBIRhoEqu141084_1076.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.

Enzyme and pathway databases

BioCyciREQU685727:GHKP-1039-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 103SImported.

Entry informationi

Entry nameiE4WE24_RHOE1
AccessioniPrimary (citable) accession number: E4WE24
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: March 4, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.