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E4UDS5 (E4UDS5_LIBSC) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:CKC_05020 EMBL ADR52753.1, CKC_05375 EMBL ADR52821.1
OrganismLiberibacter solanacearum (strain CLso-ZC1) [Complete proteome] [HAMAP] EMBL ADR52753.1
Taxonomic identifier658172 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeCandidatus Liberibacter

Protein attributes

Sequence length393 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding77 – 815GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding132 – 1354GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
E4UDS5 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: A523F9DC4FF6C0D8

FASTA39342,896
        10         20         30         40         50         60 
MAEKRFIRDK ESLGISTIGH VDHGKTTLTA AITKYYSDEQ KAYGEIDSAP EERVRGITIS 

        70         80         90        100        110        120 
TAHVHYQTAK RFYGHIDCPG HADYVKNMIT GATQADGAIL VCSAYDGPKP QTKEHILLAR 

       130        140        150        160        170        180 
QVGISSIVVY MNKVDTVDDP ELLDLVELEI RELLSYYDFP GDEVPVIRGS ALCALNGENK 

       190        200        210        220        230        240 
ELGEDSIHAL MEAVDNYIPT PSRLTDEPFL MHVESSCTIG GRGTVATGRV KRGKLVAGSD 

       250        260        270        280        290        300 
IEIIGMGGKT LKAKCTDMEM FRQKLDEAIA GDNVGLLLRG VDRADVQRGR VICAPGSIKE 

       310        320        330        340        350        360 
YSKFEASVYI LKKEEGGRHT GFLGNYRPQF FMDTADVTGK IILPPESKAV MPGDRVTLEI 

       370        380        390 
ELISPIAMEA NQRFSIREGG KTIGAGIVSK IIG 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Candidatus Liberibacter solanacearum CLso-ZC1."
Lin H., Doddapaneni H.V., Lou B., Civerolo E.L., Chen C., Duan Y., Zhou L., Glynn J.
Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CLso-ZC1.
[2]Lin H., Doddapaneni H.V., Lou B., Civerolo E.L., Chen C., Duan Y., Zhou L., Glynn J.
Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CLso-ZC1.
[3]"The Complete Genome Sequence of 'Candidatus Liberibacter solanacearum', the Bacterium Associated with Potato Zebra Chip Disease."
Lin H., Lou B., Glynn J.M., Doddapaneni H., Civerolo E.L., Chen C., Duan Y., Zhou L., Vahling C.M.
PLoS ONE 6:E19135-E19135(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CLso-ZC1 EMBL ADR52753.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002371 Genomic DNA. Translation: ADR52753.1.
CP002371 Genomic DNA. Translation: ADR52821.1.
RefSeqYP_004063241.1. NC_014774.1.
YP_004063309.1. NC_014774.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADR52753; ADR52753; CKC_05020.
ADR52821; ADR52821; CKC_05375.
GeneID10034391.
10034462.
KEGGlso:CKC_05020.
lso:CKC_05375.
PATRIC45199521. VBICanLib97138_1011.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.

Enzyme and pathway databases

BioCycLSOL658172:GHHM-1051-MONOMER.
LSOL658172:GHHM-1122-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4UDS5_LIBSC
AccessionPrimary (citable) accession number: E4UDS5
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: June 11, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)