E4UB83 (E4UB83_LIBSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribodipyrimidine photolyase EMBL ADR52562.1

Gene names

Ordered Locus Names:

CKC_04065 EMBL ADR52562.1

Organism

Liberibacter solanacearum (strain CLso-ZC1) [Complete proteome] [HAMAP] EMBL ADR52562.1

Taxonomic identifier

658172 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Candidatus Liberibacter › Candidatus Liberibacter solanacearum

Protein attributes

Sequence length	477 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Keywords
Ligand	Chromophore RuleBase RU004291 FAD RuleBase RU004291 Flavoprotein RuleBase RU004291
Molecular function	Lyase EMBL ADR52562.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro protein-chromophore linkage Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA photolyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E4UB83 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: 8F0BFBCD43DD5484	FASTA	477	56,024
	10 20 30 40 50 60 MSVHLVWLRN DLRITDNKAL YAACKNPNAK VIAVFIATPQ QWNQHGMSAR QATFIYATLL 70 80 90 100 110 120 QVQQSLSKRG IVLQYHQCSH FDDAIKWLDV YCQEKKVTEL FYNRQYEINE HRRDQELERR 130 140 150 160 170 180 LKNRVICRGF DDSVLLPPGK IFNRACEMYK IYTPFRKEFI QNLTQSDLRS VPAPTIRQTG 190 200 210 220 230 240 PVILTKVPLY FDYPFQEVDP IFPIGEYNAL QILRKFCKEK VQYYVEQRDI PAIQGTSHLS 250 260 270 280 290 300 PYLSIGALSP RQCWNRLNVE FSDVLIKTNS GAFSWLNELI WREFYHHLIV FYPSLCTGKP 310 320 330 340 350 360 FIQWTDKIEW NNDPRALEVW KQGNTGFPLV DAAMRQLNTM GWMHNRLRMI TASFLVKDLL 370 380 390 400 410 420 IDWRIGEKYF MSQLLDGNLA SNNGGWQWAA STGHDSVPYF RIFNPTTQGK RFDPKGIFIR 430 440 450 460 470 QWLPELKNVP DQYIHTPHNW IDNKNTIHPY PHPIVDHKQA RQHTISKYSI AQKQSIA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Candidatus Liberibacter solanacearum CLso-ZC1." Lin H., Doddapaneni H.V., Lou B., Civerolo E.L., Chen C., Duan Y., Zhou L., Glynn J. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CLso-ZC1.
[2]	Lin H., Doddapaneni H.V., Lou B., Civerolo E.L., Chen C., Duan Y., Zhou L., Glynn J. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: CLso-ZC1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002371 Genomic DNA. Translation: ADR52562.1.
RefSeq	YP_004063050.1. NC_014774.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADR52562; ADR52562; CKC_04065.
GeneID	10034186.
KEGG	lso:CKC_04065.
PATRIC	45199093. VBICanLib97138_0813.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000245621.
KO	K01669.
Enzyme and pathway databases
BioCyc	LSOL658172:GHHM-842-MONOMER.
Family and domain databases
Gene3D	3.40.50.620. 1 hit.
InterPro	IPR002081. Cryptochrome/DNA_photolyase_1. IPR018394. DNA_photolyase_1_CS_C. IPR006050. DNA_photolyase_N. IPR005101. Photolyase_FAD-bd/Cryptochr_C. IPR014729. Rossmann-like_a/b/a_fold. [Graphical view]
Pfam	PF00875. DNA_photolyase. 1 hit. PF03441. FAD_binding_7. 1 hit. [Graphical view]
PRINTS	PR00147. DNAPHOTLYASE.
SUPFAM	SSF52425. DNA_photolyase_N. 1 hit. SSF48173. Photolyase_FAD-bd/Cryptochr_C. 1 hit.
PROSITE	PS00394. DNA_PHOTOLYASES_1_1. 1 hit. PS00691. DNA_PHOTOLYASES_1_2. 1 hit. PS51645. PHR_CRY_ALPHA_BETA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E4UB83_LIBSC

Accession

Primary (citable) accession number: E4UB83

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)