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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Ocepr_0487

Organism
Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciOPRO670487:GH5I-494-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Ocepr_0487Imported
OrganismiOceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506)Imported
Taxonomic identifieri670487 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeOceanithermus
ProteomesiUP000008722: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

E4U673-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARREVWGLA GRRVEVKNLD KVFWPEHGYT KGDLLRYYRE VAPVMLPYLR
60 70 80 90 100
GRPLTLVMCP DGIAAGCYYR RKRPDYAPDW MPYVPYNPRT KTGQVPLILV
110 120 130 140 150
EDEAQLIWLA NQAAVEFHVW ASPARDLAHP SWLVLDLDPG NATGFGAVLE
160 170 180 190 200
AARFVRKELE ELGLVGWPKT SGGRGLHLLV PLEPGRYSHA EVRAWAKAFA
210 220 230 240 250
ARLAERSGGL LRLPHGATHR GSGVFVDYAQ NGYGRNTAAP YSLRARPGAP
260 270 280 290
VSTPLGWDEV EAGGFQPADF NLETVPERLR RSGDLLHGLQ EHRQRLADL
Length:299
Mass (Da):33,418
Last modified:February 8, 2011 - v1
Checksum:i884AA00725F00444
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002361 Genomic DNA. Translation: ADR35946.1.
RefSeqiWP_013457116.1. NC_014761.1.
YP_004057119.1. NC_014761.1.

Genome annotation databases

EnsemblBacteriaiADR35946; ADR35946; Ocepr_0487.
GeneIDi10015328.
KEGGiopr:Ocepr_0487.
PATRICi45304295. VBIOcePro145519_0611.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002361 Genomic DNA. Translation: ADR35946.1.
RefSeqiWP_013457116.1. NC_014761.1.
YP_004057119.1. NC_014761.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADR35946; ADR35946; Ocepr_0487.
GeneIDi10015328.
KEGGiopr:Ocepr_0487.
PATRICi45304295. VBIOcePro145519_0611.

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.

Enzyme and pathway databases

BioCyciOPRO670487:GH5I-494-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14977 / NBRC 100410 / VKM B-2274 / 506Imported.

Entry informationi

Entry nameiE4U673_OCEP5
AccessioniPrimary (citable) accession number: E4U673
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: February 4, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.