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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Ftrac_0770

Organism
Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter tractuosus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMTRA643867:GI2X-782-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Ftrac_0770Imported
OrganismiMarivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter tractuosus)Imported
Taxonomic identifieri643867 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesFlammeovirgaceaeMarivirga
ProteomesiUP000008720 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE4TS21.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiKHAKPAL.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4TS21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEFAQLITS LDQSNKTNDK VNALKNYFLS ANDQDKIWTL ALFTHRKPKR
60 70 80 90 100
TVNTNLLKDW VTEWTGIPEW LFQESYQVVG DLAETISLLV ASTDEGYKEV
110 120 130 140 150
DNLLSYYIKT LISLRDKSIE EKKKRLQSIY KELDPQERFV FTKIMTGGWR
160 170 180 190 200
VGVSQNLITK ALSEAFDIDK SIIAHRLMGN WSPENFTFQE LILEESKNDL
210 220 230 240 250
ASRPYPFYLA HPIETQEIQE ELNPAEWQAE WKWDGIRGQI IKRNDEVFIW
260 270 280 290 300
SRGEELVTEK FPELVEMAEK LPNGAVLDGE ITAYRNGEPL SFGVLQTRIG
310 320 330 340 350
RKNITKNLIK KAPVVFICYD IIEHKGKDIR TKALSYRTQL LNQLLLEIDH
360 370 380 390 400
PILLASQSIE FSDWVELIEI RKKSRSLKTE GLMLKKKNSI YEAGRKRGSW
410 420 430 440 450
WKWKIAPLTI DGVMIYAQKG HGRRADLYSD YTLAVWNEDE LIPFAKAYSG
460 470 480 490 500
LTDAEMKKVD AFVKKNTKEK FGPVRTVKPE LVFEIAFEGI QVSNRHKSGI
510 520 530
ALRFPRIKRW RQDKPISEAN KLTDLQHLLE KYG
Length:533
Mass (Da):61,868
Last modified:February 8, 2011 - v1
Checksum:i165EDE93AE18BEB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002349 Genomic DNA. Translation: ADR20772.1.
RefSeqiYP_004052880.1. NC_014759.1.

Genome annotation databases

EnsemblBacteriaiADR20772; ADR20772; Ftrac_0770.
KEGGimtt:Ftrac_0770.
PATRICi45214769. VBIMarTra126157_0808.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002349 Genomic DNA. Translation: ADR20772.1.
RefSeqiYP_004052880.1. NC_014759.1.

3D structure databases

ProteinModelPortaliE4TS21.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADR20772; ADR20772; Ftrac_0770.
KEGGimtt:Ftrac_0770.
PATRICi45214769. VBIMarTra126157_0808.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiKHAKPAL.

Enzyme and pathway databases

BioCyciMTRA643867:GI2X-782-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43Imported.

Entry informationi

Entry nameiE4TS21_MARTH
AccessioniPrimary (citable) accession number: E4TS21
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: April 1, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.