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Protein
Submitted name:

Type ii site-specific deoxyribonuclease

Gene

RA0C_0017

Organism
Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1868-MONOMER.

Protein family/group databases

REBASEi46596. Ran15868CORF16P.

Names & Taxonomyi

Protein namesi
Submitted name:
Type ii site-specific deoxyribonucleaseImported
Gene namesi
ORF Names:RA0C_0017Imported
OrganismiRiemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)Imported
Taxonomic identifieri693978 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella
ProteomesiUP000010093 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244578.
KOiK01155.

Family and domain databases

InterProiIPR011335. Restrct_endonuc-II-like.
IPR021191. Restrct_endonuc_II_DpmII.
IPR007637. Restrct_endonuc_II_DpmII-like.
[Graphical view]
PfamiPF04556. DpnII. 1 hit.
[Graphical view]
PIRSFiPIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAMiSSF52980. SSF52980. 1 hit.

Sequencei

Sequence statusi: Complete.

E4TDW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQFKIFLS QLSETNATLD YFADFKKIRN NVNKIAIKLN QLNYLIGKEN
60 70 80 90 100
LKEAVIELYE ENSKVFEVLD ILIAIRKNKN AKTFNNKGEI VLLDTYFTSP
110 120 130 140 150
ELILEYIEET GLAEVFRNKD VTNLVDYVFG IEVGLDTNAR KNRGGDNMSK
160 170 180 190 200
AVSLIFDKAG VFYKKEVNNT IFPEIISLGA DVKRFDFVIK TKKKTYLIET
210 220 230 240 250
NYYNSGGSKL NETARSYSDV APKINLYEGY EFVWITDGQG WFSAKNKLEE
260 270
AYNIIPSLYN LITLEDFIKK IQEETVIEF
Length:279
Mass (Da):32,137
Last modified:February 8, 2011 - v1
Checksum:iD1D54513F1E774BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD55042.1.
RefSeqiWP_004920743.1. NC_017045.1.
YP_004046479.1. NC_014738.1.
YP_005393585.1. NC_017045.1.

Genome annotation databases

EnsemblBacteriaiADQ82973; ADQ82973; Riean_1818.
AFD55042; AFD55042; RA0C_0017.
KEGGirai:RA0C_0017.
ran:Riean_1818.
PATRICi45354452. VBIRieAna155424_1855.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD55042.1.
RefSeqiWP_004920743.1. NC_017045.1.
YP_004046479.1. NC_014738.1.
YP_005393585.1. NC_017045.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

REBASEi46596. Ran15868CORF16P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADQ82973; ADQ82973; Riean_1818.
AFD55042; AFD55042; RA0C_0017.
KEGGirai:RA0C_0017.
ran:Riean_1818.
PATRICi45354452. VBIRieAna155424_1855.

Phylogenomic databases

HOGENOMiHOG000244578.
KOiK01155.

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1868-MONOMER.

Family and domain databases

InterProiIPR011335. Restrct_endonuc-II-like.
IPR021191. Restrct_endonuc_II_DpmII.
IPR007637. Restrct_endonuc_II_DpmII-like.
[Graphical view]
PfamiPF04556. DpnII. 1 hit.
[Graphical view]
PIRSFiPIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAMiSSF52980. SSF52980. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Riemerella anatipestifer reference strain."
    Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y.
    J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 11845Imported.

Entry informationi

Entry nameiE4TDW4_RIEAD
AccessioniPrimary (citable) accession number: E4TDW4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: May 27, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.