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E4TDW4 (E4TDW4_RIEAD) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.1.21.4 EMBL ADQ82973.1

Type ii site-specific deoxyribonuclease EMBL AFD55042.1
Gene names
Ordered Locus Names:Riean_1818 EMBL ADQ82973.1
ORF Names:RA0C_0017 EMBL AFD55042.1
OrganismRiemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014) [Complete proteome] [HAMAP] EMBL ADQ82973.1
Taxonomic identifier693978 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
E4TDW4 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: D1D54513F1E774BE

FASTA27932,137
        10         20         30         40         50         60 
MSEQFKIFLS QLSETNATLD YFADFKKIRN NVNKIAIKLN QLNYLIGKEN LKEAVIELYE 

        70         80         90        100        110        120 
ENSKVFEVLD ILIAIRKNKN AKTFNNKGEI VLLDTYFTSP ELILEYIEET GLAEVFRNKD 

       130        140        150        160        170        180 
VTNLVDYVFG IEVGLDTNAR KNRGGDNMSK AVSLIFDKAG VFYKKEVNNT IFPEIISLGA 

       190        200        210        220        230        240 
DVKRFDFVIK TKKKTYLIET NYYNSGGSKL NETARSYSDV APKINLYEGY EFVWITDGQG 

       250        260        270 
WFSAKNKLEE AYNIIPSLYN LITLEDFIKK IQEETVIEF 

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References

« Hide 'large scale' references
[1]"Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845)."
Mavromatis K., Lu M., Misra M., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A. expand/collapse author list , Chen A., Palaniappan K., Land M., Hauser L., Jeffries C.D., Detter J.C., Brambilla E.M., Rohde M., Goker M., Gronow S., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P., Kyrpides N.C.
Stand. Genomic Sci. 4:144-153(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014 and DSM 15868 EMBL ADQ82973.1.
[2]"Complete genome sequence of Riemerella anatipestifer reference strain."
Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y.
J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 11845 EMBL AFD55042.1.
[3]"Riemerella anatipestifer ATCC 11845 Complete Genome."
Cheng A.-C., Wang M.-S., Zhu D.-K., Wang X.-J.
Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 11845 EMBL AFD55042.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002346 Genomic DNA. Translation: ADQ82973.1.
CP003388 Genomic DNA. Translation: AFD55042.1.
RefSeqYP_004046479.1. NC_014738.1.
YP_005393585.1. NC_017045.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein family/group databases

REBASE46596. Ran15868CORF16P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADQ82973; ADQ82973; Riean_1818.
AFD55042; AFD55042; RA0C_0017.
GeneID10002598.
11996443.
KEGGrai:RA0C_0017.
ran:Riean_1818.
PATRIC45354452. VBIRieAna155424_1855.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000244578.
KOK01155.

Enzyme and pathway databases

BioCycRANA693978:GHF6-1868-MONOMER.

Family and domain databases

InterProIPR011335. Restrct_endonuc-II-like.
IPR021191. Restrct_endonuc_II_DpmII.
IPR007637. Restrct_endonuc_II_DpmII-like.
[Graphical view]
PfamPF04556. DpnII. 1 hit.
[Graphical view]
PIRSFPIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAMSSF52980. SSF52980. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE4TDW4_RIEAD
AccessionPrimary (citable) accession number: E4TDW4
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: February 19, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)