E4TDW4 (E4TDW4_RIEAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Type II site-specific deoxyribonuclease EMBL ADQ82973.1
EC=3.1.21.4 EMBL ADQ82973.1

Submitted name:
Type ii site-specific deoxyribonuclease EMBL AFD55042.1

Gene names

Ordered Locus Names:	Riean_1818
ORF Names:	RA0C_0017 EMBL AFD55042.1

Organism

Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014) [Complete proteome] [HAMAP] EMBL ADQ82973.1

Taxonomic identifier

693978 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Riemerella › Riemerella anatipestifer

Protein attributes

Sequence length	279 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ADQ82973.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA restriction-modification system Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro Type II site-specific deoxyribonuclease activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E4TDW4 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: D1D54513F1E774BE	FASTA	279	32,137
	10 20 30 40 50 60 MSEQFKIFLS QLSETNATLD YFADFKKIRN NVNKIAIKLN QLNYLIGKEN LKEAVIELYE 70 80 90 100 110 120 ENSKVFEVLD ILIAIRKNKN AKTFNNKGEI VLLDTYFTSP ELILEYIEET GLAEVFRNKD 130 140 150 160 170 180 VTNLVDYVFG IEVGLDTNAR KNRGGDNMSK AVSLIFDKAG VFYKKEVNNT IFPEIISLGA 190 200 210 220 230 240 DVKRFDFVIK TKKKTYLIET NYYNSGGSKL NETARSYSDV APKINLYEGY EFVWITDGQG 250 260 270 WFSAKNKLEE AYNIIPSLYN LITLEDFIKK IQEETVIEF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of Riemerella anatipestifer DSM 15868." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Lu M., Misra M., Brettin T., Detter J.C., Tapia R., Han C., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 15868.
[2]	"Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845)." Mavromatis K., Lu M., Misra M., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A. , Chen A., Palaniappan K., Land M., Hauser L., Jeffries C.D., Detter J.C., Brambilla E.M., Rohde M., Goker M., Gronow S., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P., Kyrpides N.C. Stand. Genomic Sci. 4:144-153(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014.
[3]	"Complete genome sequence of Riemerella anatipestifer reference strain." Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y. J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11845 EMBL AFD55042.1.
[4]	"Riemerella anatipestifer ATCC 11845 Complete Genome." Cheng A.-C., Wang M.-S., Zhu D.-K., Wang X.-J. Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 11845 EMBL AFD55042.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002346 Genomic DNA. Translation: ADQ82973.1. CP003388 Genomic DNA. Translation: AFD55042.1.
RefSeq	YP_004046479.1. NC_014738.1. YP_005393585.1. NC_017045.1.
3D structure databases
ModBase	Search...
Protein family/group databases
REBASE	46596. Ran15868CORF16P.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADQ82973; ADQ82973; Riean_1818. AFD55042; AFD55042; RA0C_0017.
GeneID	10002598. 11996443.
KEGG	rai:RA0C_0017. ran:Riean_1818.
PATRIC	45354452. VBIRieAna155424_1855.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000244578.
KO	K01155.
Enzyme and pathway databases
BioCyc	RANA693978:GHF6-1868-MONOMER.
Family and domain databases
InterPro	IPR011335. Restrct_endonuc-II-like. IPR021191. Restrct_endonuc_II_DpmII. IPR007637. Restrct_endonuc_II_DpmII-like. [Graphical view]
Pfam	PF04556. DpnII. 1 hit. [Graphical view]
PIRSF	PIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAM	SSF52980. Restrict_endonuc_II-like_core. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E4TDW4_RIEAD

Accession

Primary (citable) accession number: E4TDW4

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)