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Protein
Submitted name:

D-alanine--D-alanine ligase

Gene

RA0C_1871

Organism
Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. D-alanine-D-alanine ligase activity Source: UniProtKB-HAMAP
  3. magnesium ion binding Source: UniProtKB-HAMAP
  4. manganese ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. cell wall organization Source: UniProtKB-KW
  2. peptidoglycan biosynthetic process Source: UniProtKB-HAMAP
  3. regulation of cell shape Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1627-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
D-alanine--D-alanine ligaseImported
Gene namesi
ORF Names:RA0C_1871Imported
OrganismiRiemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)Imported
Taxonomic identifieri693978 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella
ProteomesiUP000010093 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000011592.
KOiK01921.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
HAMAPiMF_00047. Dala_Dala_lig.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
PIRSFiPIRSF039102. Ddl/VanB. 1 hit.
SUPFAMiSSF52440. SSF52440. 1 hit.
TIGRFAMsiTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4TD77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKKNIAVVM GGYSDEYKVS LKSGQLIYDS LDRDLYNVYK VVVLKEGWFY
60 70 80 90 100
LDENEAKLPI QKGDFSVNLP SGEVLRFDVC FNTIHGTPGE NGVLQAYWDA
110 120 130 140 150
IGQKYTGCDF YQSALTFNKK DTLAVLAKYG IPSAKSFYIK KGEAYDKDKI
160 170 180 190 200
INELKLPLFV KPNQSGSSLG ISKVKEVSEF EAALEKAFLE DDEVLVESFL
210 220 230 240 250
DGMEVSVGVL DYKGETIVLG ITEIIPETEF FDYEAKYQGA SQEITPARLD
260 270 280 290 300
EATRLRVEEV AKRAYNSLGM KGFSRSEYII MNGVPYMLEM NTNPGFSPAS
310 320
ILPQQARIYG ISIKDLCGNE VEKALAK
Length:327
Mass (Da):36,504
Last modified:February 8, 2011 - v1
Checksum:iCC0D89F980A0ACE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD56746.1.
RefSeqiYP_004046242.1. NC_014738.1.
YP_005395289.1. NC_017045.1.

Genome annotation databases

EnsemblBacteriaiADQ82736; ADQ82736; Riean_1579.
AFD56746; AFD56746; RA0C_1871.
KEGGirai:RA0C_1871.
ran:Riean_1579.
PATRICi45353953. VBIRieAna155424_1607.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD56746.1.
RefSeqiYP_004046242.1. NC_014738.1.
YP_005395289.1. NC_017045.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADQ82736; ADQ82736; Riean_1579.
AFD56746; AFD56746; RA0C_1871.
KEGGirai:RA0C_1871.
ran:Riean_1579.
PATRICi45353953. VBIRieAna155424_1607.

Phylogenomic databases

HOGENOMiHOG000011592.
KOiK01921.

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1627-MONOMER.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
HAMAPiMF_00047. Dala_Dala_lig.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
PIRSFiPIRSF039102. Ddl/VanB. 1 hit.
SUPFAMiSSF52440. SSF52440. 1 hit.
TIGRFAMsiTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Riemerella anatipestifer reference strain."
    Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y.
    J. Bacteriol. 194:3270-3271(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 11845Imported.

Entry informationi

Entry nameiE4TD77_RIEAD
AccessioniPrimary (citable) accession number: E4TD77
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: April 1, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.