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Protein
Submitted name:

Alanine racemase

Gene

RA0C_1428

Organism
Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseSAAS annotation

Keywords - Ligandi

Pyridoxal phosphateSAAS annotation

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1191-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alanine racemaseImported
Gene namesi
ORF Names:RA0C_1428Imported
OrganismiRiemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)Imported
Taxonomic identifieri693978 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella
ProteomesiUP000010093 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE4TAG0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000274965.
KOiK01775.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
3.40.1190.10. 1 hit.
3.40.1390.10. 1 hit.
3.90.190.20. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR004101. Mur_ligase_C.
IPR013221. Mur_ligase_cen.
IPR000713. Mur_ligase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
PF01225. Mur_ligase. 1 hit.
PF08245. Mur_ligase_M. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
SSF53244. SSF53244. 1 hit.
SSF53623. SSF53623. 1 hit.
SSF63418. SSF63418. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.

Sequencei

Sequence statusi: Complete.

E4TAG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYTARQIAE ITGAKLIGAG DKIIKHFAFD SRIIYSPKNT GFVAIKTKKN
60 70 80 90 100
NGEKYIASAV EKGIELIVSE HKTLDNEHLS WLIVDDTVKF LQKLAHLHLK
110 120 130 140 150
SHNIQTIGIT GSNGKTIVKE WLYQCLSEDI RCVKSPKSFN SQIGLPLSLL
160 170 180 190 200
NIKPEHKVGI FEVGISEPNE MTTLETIFSP KIGVLTHIGS AHISNFKSEK
210 220 230 240 250
HLVDEKISLF KDSESIIFNG DNILVSNKIN TLYSSKNLIS YGFNKDNNIH
260 270 280 290 300
ISSNWKDRQQ PITVQCFDKS FSFPAQQRDE ATLSNVLAII AVMHLLEFST
310 320 330 340 350
EKMIEKINNL KAVEMRLESV NGIKNNLIIN DSFNLDLDSL KIAFEFIKSY
360 370 380 390 400
QKPKKSLIIT DFTEKSDADN LYQEVASLIN EQNFNKVFLI GEEISQYQHL
410 420 430 440 450
LNTESFSFNT TNDLFSNQEF KDLENELILL KGARKFEIEQ VKTYLELQKH
460 470 480 490 500
DTVLEVNLNN LLHNINVHKS LLKPETKIMA MVKAYSYGLG GYEIAEFLQH
510 520 530 540 550
HHIDYLGVAV ADEGVELRKN GITVPIVVMN PEQHSYNTII EYNLEPNIYS
560 570 580 590 600
FRVLELFHKQ LKQNGYEGRY PIHIKLETGM HRLGFKEDEI DQLKDYLNQM
610 620 630 640 650
SVKVESIFSH LSSSDIPQEK DYTLAQCQKF DKLSQNIIKD LNYKPLRHIL
660 670 680 690 700
NSAGITNYTY YQMDMVRIGI GMMGISASPE IQPLLNPVVA FKSVISQISE
710 720 730 740 750
IQPNDSVSYG RRYKASKSTR IATIPVGYAD GVPRLLSNGV GYVGIKNTLC
760 770 780 790 800
PIVGSVCMDM MMVDISDLPT KEGDEVTIFH EKPSLEDFAM YSQTIPYEVL
810
TSISRRVKRV YIKD
Length:814
Mass (Da):92,484
Last modified:February 8, 2011 - v1
Checksum:i9FD4B39EDB4B2E6F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD56323.1.
RefSeqiWP_004920603.1. NC_017045.1.

Genome annotation databases

EnsemblBacteriaiADQ82320; ADQ82320; Riean_1160.
AFD56323; AFD56323; RA0C_1428.
KEGGirai:RA0C_1428.
ran:Riean_1160.
PATRICi45353060. VBIRieAna155424_1179.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD56323.1.
RefSeqiWP_004920603.1. NC_017045.1.

3D structure databases

ProteinModelPortaliE4TAG0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADQ82320; ADQ82320; Riean_1160.
AFD56323; AFD56323; RA0C_1428.
KEGGirai:RA0C_1428.
ran:Riean_1160.
PATRICi45353060. VBIRieAna155424_1179.

Phylogenomic databases

HOGENOMiHOG000274965.
KOiK01775.

Enzyme and pathway databases

BioCyciRANA693978:GHF6-1191-MONOMER.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
3.40.1190.10. 1 hit.
3.40.1390.10. 1 hit.
3.90.190.20. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR004101. Mur_ligase_C.
IPR013221. Mur_ligase_cen.
IPR000713. Mur_ligase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
PF01225. Mur_ligase. 1 hit.
PF08245. Mur_ligase_M. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
SSF53244. SSF53244. 1 hit.
SSF53623. SSF53623. 1 hit.
SSF63418. SSF63418. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Riemerella anatipestifer reference strain."
    Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y.
    J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 11845Imported.

Entry informationi

Entry nameiE4TAG0_RIEAD
AccessioniPrimary (citable) accession number: E4TAG0
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: July 22, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.