E4TAG0 (E4TAG0_RIEAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADQ82320.1

Gene names

Ordered Locus Names:	Riean_1160
ORF Names:	RA0C_1428 EMBL AFD56323.1

Organism

Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014) [Complete proteome] [HAMAP] EMBL ADQ82320.1

Taxonomic identifier

693978 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Riemerella › Riemerella anatipestifer

Protein attributes

Sequence length	814 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS011079

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro biosynthetic process Inferred from electronic annotation. Source: InterPro cell division Inferred from electronic annotation. Source: InterPro regulation of cell shape Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity Inferred from electronic annotation. Source: InterPro alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E4TAG0 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: 9FD4B39EDB4B2E6F	FASTA	814	92,484
	10 20 30 40 50 60 MNYTARQIAE ITGAKLIGAG DKIIKHFAFD SRIIYSPKNT GFVAIKTKKN NGEKYIASAV 70 80 90 100 110 120 EKGIELIVSE HKTLDNEHLS WLIVDDTVKF LQKLAHLHLK SHNIQTIGIT GSNGKTIVKE 130 140 150 160 170 180 WLYQCLSEDI RCVKSPKSFN SQIGLPLSLL NIKPEHKVGI FEVGISEPNE MTTLETIFSP 190 200 210 220 230 240 KIGVLTHIGS AHISNFKSEK HLVDEKISLF KDSESIIFNG DNILVSNKIN TLYSSKNLIS 250 260 270 280 290 300 YGFNKDNNIH ISSNWKDRQQ PITVQCFDKS FSFPAQQRDE ATLSNVLAII AVMHLLEFST 310 320 330 340 350 360 EKMIEKINNL KAVEMRLESV NGIKNNLIIN DSFNLDLDSL KIAFEFIKSY QKPKKSLIIT 370 380 390 400 410 420 DFTEKSDADN LYQEVASLIN EQNFNKVFLI GEEISQYQHL LNTESFSFNT TNDLFSNQEF 430 440 450 460 470 480 KDLENELILL KGARKFEIEQ VKTYLELQKH DTVLEVNLNN LLHNINVHKS LLKPETKIMA 490 500 510 520 530 540 MVKAYSYGLG GYEIAEFLQH HHIDYLGVAV ADEGVELRKN GITVPIVVMN PEQHSYNTII 550 560 570 580 590 600 EYNLEPNIYS FRVLELFHKQ LKQNGYEGRY PIHIKLETGM HRLGFKEDEI DQLKDYLNQM 610 620 630 640 650 660 SVKVESIFSH LSSSDIPQEK DYTLAQCQKF DKLSQNIIKD LNYKPLRHIL NSAGITNYTY 670 680 690 700 710 720 YQMDMVRIGI GMMGISASPE IQPLLNPVVA FKSVISQISE IQPNDSVSYG RRYKASKSTR 730 740 750 760 770 780 IATIPVGYAD GVPRLLSNGV GYVGIKNTLC PIVGSVCMDM MMVDISDLPT KEGDEVTIFH 790 800 810 EKPSLEDFAM YSQTIPYEVL TSISRRVKRV YIKD

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of Riemerella anatipestifer DSM 15868." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Lu M., Misra M., Brettin T., Detter J.C., Tapia R., Han C., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 15868.
[2]	"Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845)." Mavromatis K., Lu M., Misra M., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A. , Chen A., Palaniappan K., Land M., Hauser L., Jeffries C.D., Detter J.C., Brambilla E.M., Rohde M., Goker M., Gronow S., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P., Kyrpides N.C. Stand. Genomic Sci. 4:144-153(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014.
[3]	"Complete genome sequence of Riemerella anatipestifer reference strain." Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y. J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11845 EMBL AFD56323.1.
[4]	"Riemerella anatipestifer ATCC 11845 Complete Genome." Cheng A.-C., Wang M.-S., Zhu D.-K., Wang X.-J. Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 11845 EMBL AFD56323.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002346 Genomic DNA. Translation: ADQ82320.1. CP003388 Genomic DNA. Translation: AFD56323.1.
RefSeq	YP_004045826.1. NC_014738.1. YP_005394866.1. NC_017045.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADQ82320; ADQ82320; Riean_1160. AFD56323; AFD56323; RA0C_1428.
GeneID	10001921. 11996390.
KEGG	rai:RA0C_1428. ran:Riean_1160.
PATRIC	45353060. VBIRieAna155424_1179.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000274965.
KO	K01775.
Enzyme and pathway databases
BioCyc	RANA693978:GHF6-1191-MONOMER.
Family and domain databases
Gene3D	2.40.37.10. 1 hit. 3.40.1190.10. 1 hit. 3.90.190.20. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR000713. Mur_ligase_N. IPR005863. UDP-N-AcMur-pentapeptide_synth. [Graphical view]
PANTHER	PTHR23135:SF3. PTHR23135:SF3. 1 hit.
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. PF01225. Mur_ligase. 1 hit. PF08245. Mur_ligase_M. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF53244. Mur_ligase_C. 1 hit. SSF53623. Mur_ligase_cen. 1 hit. SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E4TAG0_RIEAD

Accession

Primary (citable) accession number: E4TAG0

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)