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Protein
Submitted name:

Isocitrate dehydrogenase, nADP-dependent

Gene

RA0C_0407

Organism
Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciRANA693978:GHF6-200-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Isocitrate dehydrogenase, nADP-dependentImported
Gene namesi
ORF Names:RA0C_0407Imported
OrganismiRiemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014)Imported
Taxonomic identifieri693978 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella
ProteomesiUP000010093 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE4T8V8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000240860.
KOiK00031.

Family and domain databases

Gene3Di3.40.718.10. 3 hits.
InterProiIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamiPF03971. IDH. 1 hit.
[Graphical view]
PIRSFiPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsiTIGR00178. monomer_idh. 1 hit.

Sequencei

Sequence statusi: Complete.

E4T8V8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTAKIYYTL TDEAPMLATH SFLPIVKAFA KSADIQIEVP DISLSGRILA
60 70 80 90 100
NFPEVLTEEQ RIPDALSQLG ELATKPEANI IKLPNISASI PQLNEAIEEL
110 120 130 140 150
QKKGFNVPNY PAEPKTEEEK EIKAKYAKVL GSAVNPVLRE GNSDRRAPKA
160 170 180 190 200
VKNYAKANPH RMGEWKSDSK TDVAHMNQGD FYGTETSTTV EKDGKFKIVF
210 220 230 240 250
FGNDGSEKVL KDYASLQAGE IIDSSVMNIK ALKTFVKEAI QEAKSRNVLL
260 270 280 290 300
SAHLKATMMK VSDPIIFGAI VETFFQEVFE KYAETFKSLD VNPNDGLASL
310 320 330 340 350
YDKIAGIAQE ADIKVDIEHV LNESSRVAMV NSDKGITNFH VPSDVIVDAS
360 370 380 390 400
MAALVRGGGK MWNKDGQEED TLAIIPDRSY AGFYQAVIDD MKANGKLDPT
410 420 430 440 450
TMGSVPNVGL MAKKAEEYGS HDKTFQMEAE GTVKVLNENN EVLLEQKVET
460 470 480 490 500
GDIFRMCQTK DAPIQDWVKL AVNRSRLSDT PAIFWLDKGR AHDREVIKKV
510 520 530 540 550
EQYLKNYDTQ GLDIKILDVK DAMSETLKRA REGKDTISVS GNVLRDYLTD
560 570 580 590 600
LFPILELGTS AKMLSIVPLM NGGGLFETGA GGSAPKHIEQ FIEEGYLRWD
610 620 630 640 650
SLGEFLALQA SLEHLAQTQN NTKAQVLADA LDEANAKFLA NDKSPARKIG
660 670 680 690 700
SIDNRGSHFY LALYWAEALA AQTQDSELST LFQPIAKEMQ ENEAKINEEL
710 720 730
IASQGKAQDI EGYYRPNEDK TYAAMRPSVT LNQIIDRI
Length:738
Mass (Da):81,657
Last modified:February 8, 2011 - v1
Checksum:iB56B3E43408AFD12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD55390.1.
RefSeqiWP_004919081.1. NC_017045.1.

Genome annotation databases

EnsemblBacteriaiADQ81372; ADQ81372; Riean_0199.
AFD55390; AFD55390; RA0C_0407.
KEGGirai:RA0C_0407.
ran:Riean_0199.
PATRICi45351038. VBIRieAna155424_0201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003388 Genomic DNA. Translation: AFD55390.1.
RefSeqiWP_004919081.1. NC_017045.1.

3D structure databases

ProteinModelPortaliE4T8V8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADQ81372; ADQ81372; Riean_0199.
AFD55390; AFD55390; RA0C_0407.
KEGGirai:RA0C_0407.
ran:Riean_0199.
PATRICi45351038. VBIRieAna155424_0201.

Phylogenomic databases

HOGENOMiHOG000240860.
KOiK00031.

Enzyme and pathway databases

BioCyciRANA693978:GHF6-200-MONOMER.

Family and domain databases

Gene3Di3.40.718.10. 3 hits.
InterProiIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamiPF03971. IDH. 1 hit.
[Graphical view]
PIRSFiPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsiTIGR00178. monomer_idh. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Riemerella anatipestifer reference strain."
    Wang X., Zhu D., Wang M., Cheng A., Jia R., Zhou Y., Chen Z., Luo Q., Liu F., Wang Y., Chen X.Y.
    J. Bacteriol. 194:3270-3271(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 11845Imported.

Entry informationi

Entry nameiE4T8V8_RIEAD
AccessioniPrimary (citable) accession number: E4T8V8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: July 22, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.