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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Calkro_2177

Organism
Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciCKRO632348:GI5C-2229-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Calkro_2177Imported
OrganismiCaldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002)Imported
Taxonomic identifieri632348 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor
ProteomesiUP000006835: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3434 PotentialImportedAdd
BLAST
Chaini35 – 482448 PotentialImportedPRO_5000660175Add
BLAST

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000031038.
KOiK01176.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

E4SGZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGLFKKLSK KLTIISLIVI IVFLLTSSLS IYAGVMMQGF YWDVPAGGTW
60 70 80 90 100
WNTLASKAYE LKYMVGGSYG INRIWFPPAY KGQGGAYSMG YDPHDYYDLG
110 120 130 140 150
QYYQDGTTET RFGSQSELKN AISKYKSYGI SVTEDIVLNH RSGGKSEYNP
160 170 180 190 200
KTGTNTWTDF TNTASGMCQW HWDAFHPNNY CSGDEGTFAG FPDVCYTSGP
210 220 230 240 250
AYNDMKAWMN WLKSSTNAGF DSWRYDYVKG YGYWVVKDFN AATSPTFSVG
260 270 280 290 300
EYWDANTSTL DWWANSSGSS VFDFALYYTL RDICNNTSGS GYLPNVFDYS
310 320 330 340 350
KSYAAKNPFK AVTFVANHDT DEIVNDKMMA YAFILTYQGY PCIFWKDYYD
360 370 380 390 400
YGLATGGGAS PGGWGNGIKQ LVWCREKLAA GAPNIEILKS NDGDIIIYGS
410 420 430 440 450
KGYSTSSPGY IVVINDHPSQ WKGAWVQTSN SYLKGKTLKA YAWSSTVSGQ
460 470 480
NVQPQNKYCD ANGWVEVWAP PRGYAVYSVD GL
Length:482
Mass (Da):53,810
Last modified:February 8, 2011 - v1
Checksum:i07DFDD19C5392E72
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002330 Genomic DNA. Translation: ADQ47015.1.
RefSeqiWP_013431087.1. NC_014720.1.
YP_004024834.1. NC_014720.1.

Genome annotation databases

EnsemblBacteriaiADQ47015; ADQ47015; Calkro_2177.
GeneIDi9982156.
KEGGickn:Calkro_2177.
PATRICi42811421. VBICalKro6863_2292.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002330 Genomic DNA. Translation: ADQ47015.1.
RefSeqiWP_013431087.1. NC_014720.1.
YP_004024834.1. NC_014720.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADQ47015; ADQ47015; Calkro_2177.
GeneIDi9982156.
KEGGickn:Calkro_2177.
PATRICi42811421. VBICalKro6863_2292.

Phylogenomic databases

HOGENOMiHOG000031038.
KOiK01176.

Enzyme and pathway databases

BioCyciCKRO632348:GI5C-2229-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Caldicellulosiruptor kronotskyensis 2002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N., Blumer-Schuette S.E., Kelly R.M., Woyke T.
    Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2002.
  2. "Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus."
    Blumer-Schuette S.E., Ozdemir I., Mistry D., Lucas S., Lapidus A., Cheng J.F., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J., Woyke T., Mikhailova N., Pati A., Kyrpides N.C., Ivanova N., Detter J.C., Walston-Davenport K., Han S., Adams M.W., Kelly R.M.
    J. Bacteriol. 193:1483-1484(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18902 / VKM B-2412 / 2002Imported.

Entry informationi

Entry nameiE4SGZ0_CALK2
AccessioniPrimary (citable) accession number: E4SGZ0
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: January 7, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.