E4RYK6 (E4RYK6_LEAB4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-oxoglutarate dehydrogenase, E1 subunit EMBL ADQ19136.1
EC=1.2.4.2 EMBL ADQ19136.1

Gene names

Ordered Locus Names:

Lbys_3488

Organism

Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) [Complete proteome] [HAMAP] EMBL ADQ19136.1

Taxonomic identifier

649349 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Leadbetterella › Leadbetterella byssophila

Protein attributes

Sequence length	916 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Oxidoreductase EMBL ADQ19136.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	oxoglutarate dehydrogenase (succinyl-transferring) activity Inferred from electronic annotation. Source: EC thiamine pyrophosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E4RYK6 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: ABE74D2A9E1A4077	FASTA	916	104,607
	10 20 30 40 50 60 MDQFSYIANG DVSAIEALYK QYLQDPSSVD KSWQFFFKGY EFNNTWGEGP GKAGVSSDSL 70 80 90 100 110 120 QKEREVVHLI RGYRSRGHLL SQIDPIYSKR KYNANLDLKF FGLSEADYDT VFEAGVEVFG 130 140 150 160 170 180 RPATLRELET FLKNVYGGKI GYEYLYIRDS KVKNWLRNKV ESDYLNYKPS KEQKLRILGN 190 200 210 220 230 240 LNKAVAFENF LHTKFLGKKR FSLEGGESTI PALDAAIQHG AKLGVEEVVI GMAHRGRLNV 250 260 270 280 290 300 LTNIMQKPYE QVFNEFEENV PTLEFSDGDV KYHMGYSSQV ETVEGHRVSL KLMANPSHLE 310 320 330 340 350 360 TVDPVVLGYA RARADAHFKS EGTKYNSFDD IYDKILPIII HGDASLAGQG VVYEVNQMSN 370 380 390 400 410 420 LPGYYVGGAI HFIINNQIGF TTDNRDARSS IYSSDVAKML DTPILHVNGD DAEAVVYAME 430 440 450 460 470 480 LAIEFRQEFN KDIYIDMICY RKYGHNEADE PKFTQPGMYE IISKHPSPRE IYIEKLKSDG 490 500 510 520 530 540 TITDNDARTL KEQFDNNLQD LLSKVKQNQL PYELPKLERD WAELRRSTVG DFDSSPRTGI 550 560 570 580 590 600 SREEIELVGK ALSTVPEGFT PIKQIEKVLE ERREIFAGKK PFNWAAAELL AYGSILAEEK 610 620 630 640 650 660 WVRMSGQDVQ RGTFSHRHAI LHDVKTYEAY NNLAHIKPNQ GKFEIYNSLL SEYAVMGFEY 670 680 690 700 710 720 GYALANPNAL VIWEAQFGDF ANGAQIMIDQ FVVAAESKWN LMNGLVLLLP HGYEGQGPEH 730 740 750 760 770 780 SNARPERFLQ LAGEYNIYVC NCTTPANFFH MLRRQLALPF RKPCVHMSPK SMLRHPMAIS 790 800 810 820 830 840 DISEFETGTS FREVIGDADA DPKKVKRVLL CTGKIYYDLL KRKMDSKRED IAIIRLEQLY 850 860 870 880 890 900 PLPKVQLLAE LEKYAGAEQI WVQEEPLNMG YWSYLRREYP EANWDVISRK ISASPATGYT 910 KNHNEFQNKI LDKAFE

References

[1]

"The complete genome of Leadbetterella byssophila DSM 17132." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Teshima H., Brettin T., Detter J.C., Han C., Tapia R., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H.G., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17132.

[2]

"Complete genome sequence of Leadbetterella byssophila type strain (4M15)." Abt B., Tashima H., Lucas S., Lapidus A., Glavina Del Rio T., Nolan M., Tice H., Cheng J., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Pati A., Tapia R., Han C., Goodwin L., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Rohde M., Goker M., Tindall B., Detter J., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Klenk H., Kyrpides N. Stand. Genomic Sci. 4:2-12(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17132 / KACC 11308 / 4M15.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002305 Genomic DNA. Translation: ADQ19136.1.
RefSeq	YP_003999489.1. NC_014655.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADQ19136; ADQ19136; Lbys_3488.
GeneID	9957374.
KEGG	lby:Lbys_3488.
PATRIC	42657107. VBILeaBys116579_3583.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000259586.
KO	K00164.
OMA	EKVAITR.
Enzyme and pathway databases
BioCyc	LBYS649349:GHFA-3540-MONOMER.
Family and domain databases
InterPro	IPR011603. 2oxoglutarate_DH_E1. IPR001017. DH_E1. IPR005475. Transketolase-like_Pyr-bd. [Graphical view]
PANTHER	PTHR23152. PTHR23152. 1 hit.
Pfam	PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view]
PIRSF	PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
TIGRFAMs	TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E4RYK6_LEAB4

Accession

Primary (citable) accession number: E4RYK6

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)