E4RY77 (E4RY77_LEAB4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase catalytic EMBL ADQ17288.1

Gene names

Ordered Locus Names:

Lbys_1580

Organism

Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) [Complete proteome] [HAMAP] EMBL ADQ17288.1

Taxonomic identifier

649349 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Leadbetterella › Leadbetterella byssophila

Protein attributes

Sequence length	508 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ADQ17288.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro
Molecular_function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 22	22	Potential EMBL ADQ17288.1
	Chain	23 – 508	486	Potential EMBL ADQ17288.1		PRO_5000659587

Sequences

	Sequence		Length	Mass (Da)
	E4RY77 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: C1B5DF8A1DA97B02	FASTA	508	57,922
	10 20 30 40 50 60 MKLSKLFLAC SVVTVFSGGV WGQINEVEEE PVVVEEVKIS YPYQVQVIDE RDNVPFTITV 70 80 90 100 110 120 LDPEIIKARL KSIEKTMPMV YNESVAFWLN YFTQRRPNFT KTMMEEMSYY FPIFEKILKQ 130 140 150 160 170 180 NDMPEELKYL AILESGLNPK AVSRAKAVGL WQFMSFTGKE YGLTINEYVD ERMHPEKSTD 190 200 210 220 230 240 AACRYLKFLN RMFNDWDLAL ASYNTGQGRI SRAMKKTGLT NYWDLHPHIP KDTRHYVPMF 250 260 270 280 290 300 ISLAYLMNFG QDHGIVPEKE NVRPPLENIY VDSNVDLQVL ADLTQINLDE LKKYNPHLKA 310 320 330 340 350 360 TVLPQSKYGY EIALPTTSMA YFSENRAMIL DSIGKRFRSV ETITAPQSEA VLANVIAEPT 370 380 390 400 410 420 EEGTIIIGRP AAKQQVASNV SQEYVSVTRK VKKVHKVKRG EVLGKIASHY GVSVNDIKKW 430 440 450 460 470 480 NNKSNTKVVV GESLAIYVDK SEKVKANSLV ANKSSDNVKQ PIIHTVRRGD TLWNISQRYE 490 500 GVSVNDLKKW NNLKGNNVVV GQKIRIRA

References

[1]

"The complete genome of Leadbetterella byssophila DSM 17132." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Teshima H., Brettin T., Detter J.C., Han C., Tapia R., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H.G., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17132.

[2]

"Complete genome sequence of Leadbetterella byssophila type strain (4M15)." Abt B., Tashima H., Lucas S., Lapidus A., Glavina Del Rio T., Nolan M., Tice H., Cheng J., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Pati A., Tapia R., Han C., Goodwin L., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Rohde M., Goker M., Tindall B., Detter J., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Klenk H., Kyrpides N. Stand. Genomic Sci. 4:2-12(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17132 / KACC 11308 / 4M15.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002305 Genomic DNA. Translation: ADQ17288.1.
RefSeq	YP_003997641.1. NC_014655.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADQ17288; ADQ17288; Lbys_1580.
GeneID	9955434.
KEGG	lby:Lbys_1580.
PATRIC	42653127. VBILeaBys116579_1620.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000109501.
KO	K08307.
OMA	PIELKYL.
Enzyme and pathway databases
BioCyc	LBYS649349:GHFA-1601-MONOMER.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
Pfam	PF01476. LysM. 2 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E4RY77_LEAB4

Accession

Primary (citable) accession number: E4RY77

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)