E4RHW3 (E4RHW3_PSEPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alr EMBL ADR59688.1
EC=5.1.1.1 EMBL ADR59688.1

Gene names

Name:	alr
Synonyms:	alr2
Ordered Locus Names:	PPUBIRD1_2040

Organism

Pseudomonas putida (strain BIRD-1) [Complete proteome] [HAMAP] EMBL ADR59688.1

Taxonomic identifier

931281 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	380 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADR59688.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E4RHW3 [UniParc]. Last modified February 8, 2011. Version 1. Checksum: 48DE849B2DD04559	FASTA	380	41,138
	10 20 30 40 50 60 MDNGTNTLTV QNSNAWVEVS ASALQHNIRT LQAELAGKSK LCAVLKADAY GHGIGLVMPS 70 80 90 100 110 120 IIAQGVPCVA VASNEEARVV RASGFTGQLV RVRLASLSEL EDGLQYDMEE LVGSAEFARQ 130 140 150 160 170 180 ADAIAARHGK TLRIHMALNS SGMSRNGVEM ATWSGRGEAL QITDQKHLKL VALMTHFAVE 190 200 210 220 230 240 DKDDVRKGLA AFNEQTDWLI KHAKLDRSKL TLHAANSFAT LEVPEARLDM VRTGGALFGD 250 260 270 280 290 300 TVPGRTEYKR AMQFKSHVAA VHSYPAGNTV GYDRTFTLAR DSRLANITVG YSDGYRRVFT 310 320 330 340 350 360 NKGHVLINGH RVPVVGKVSM NTLMVDVTDF PDVKGGNEVV LFGKQAGGEI TQAEMEEING 370 380 ALLADLYTVW GSSNPKMLVD

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1." Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L. Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BIRD-1.
[2]	"Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1." Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L. J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BIRD-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002290 Genomic DNA. Translation: ADR59688.1.
RefSeq	YP_005929893.1. NC_017530.1.
3D structure databases
ProteinModelPortal	E4RHW3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADR59688; ADR59688; PPUBIRD1_2040.
GeneID	12520257.
KEGG	ppb:PPUBIRD1_2040.
PATRIC	45406028. VBIPsePut176522_2057.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E4RHW3_PSEPB

Accession

Primary (citable) accession number: E4RHW3

Entry history

Integrated into UniProtKB/TrEMBL:	February 8, 2011
Last sequence update:	February 8, 2011
Last modified:	May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)