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E4RHW3 (E4RHW3_PSEPB) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length380 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site461Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2721Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1451Substrate By similarity HAMAP-Rule MF_01201
Binding site3201Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue461N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
E4RHW3 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: 48DE849B2DD04559

FASTA38041,138
        10         20         30         40         50         60 
MDNGTNTLTV QNSNAWVEVS ASALQHNIRT LQAELAGKSK LCAVLKADAY GHGIGLVMPS 

        70         80         90        100        110        120 
IIAQGVPCVA VASNEEARVV RASGFTGQLV RVRLASLSEL EDGLQYDMEE LVGSAEFARQ 

       130        140        150        160        170        180 
ADAIAARHGK TLRIHMALNS SGMSRNGVEM ATWSGRGEAL QITDQKHLKL VALMTHFAVE 

       190        200        210        220        230        240 
DKDDVRKGLA AFNEQTDWLI KHAKLDRSKL TLHAANSFAT LEVPEARLDM VRTGGALFGD 

       250        260        270        280        290        300 
TVPGRTEYKR AMQFKSHVAA VHSYPAGNTV GYDRTFTLAR DSRLANITVG YSDGYRRVFT 

       310        320        330        340        350        360 
NKGHVLINGH RVPVVGKVSM NTLMVDVTDF PDVKGGNEVV LFGKQAGGEI TQAEMEEING 

       370        380 
ALLADLYTVW GSSNPKMLVD 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BIRD-1.
[2]"Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BIRD-1 EMBL ADR59688.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002290 Genomic DNA. Translation: ADR59688.1.
RefSeqYP_005929893.1. NC_017530.1.

3D structure databases

ProteinModelPortalE4RHW3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADR59688; ADR59688; PPUBIRD1_2040.
GeneID12520257.
KEGGppb:PPUBIRD1_2040.
PATRIC45406028. VBIPsePut176522_2057.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMAQQIPCVA.

Enzyme and pathway databases

BioCycPPUT931281:GLIU-2024-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4RHW3_PSEPB
AccessionPrimary (citable) accession number: E4RHW3
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: July 9, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)