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E4RF46 (E4RF46_PSEPB) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=5.4.99.16 EMBL ADR59429.1
Gene names
Ordered Locus Names:PPUBIRD1_1765 EMBL ADR59429.1
OrganismPseudomonas putida (strain BIRD-1) [Complete proteome] [HAMAP] EMBL ADR59429.1
Taxonomic identifier931281 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length1109 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
E4RF46 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: 08223CF74ACBF7A9

FASTA1,109125,961
        10         20         30         40         50         60 
MAKRSRPAAF IDDPLWYKDA VIYQLHIKSF FDSNNDGIGD FAGLISKLDY IAELGVNTLW 

        70         80         90        100        110        120 
LLPFYPSPRR DDGYDIAEYK AVHPDYGSMA DARRFIAEAH KRGLRVITEL VINHTSDQHP 

       130        140        150        160        170        180 
WFQRARHAKR GSKAREFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ 

       190        200        210        220        230        240 
PDLNFDNPQV LKAVIGVMRF WLDLGVDGLR LDAIPYLIER DGTNNENLVE THDVLKAIRA 

       250        260        270        280        290        300 
EIDANYPDRM LLAEANQWPE DTRPYFGEGD GDECHMAFHF PLMPRMYMAL AMEDRFPITD 

       310        320        330        340        350        360 
ILRQTPEIPA NCQWAIFLRN HDELTLEMVT DRERDYLWNY YAEDRRARIN LGIRRRLAPL 

       370        380        390        400        410        420 
LQRDRRRIEL LTSLLLSMPG TPTLYYGDEL GMGDNIYLGD RDGVRTPMQW SPDRNGGFSR 

       430        440        450        460        470        480 
ADPQRLVLPP IMDPLYGYQT VNVEAQSHDP HSLLNWTRRM LAVRKQQKAF GRGSLRTLTP 

       490        500        510        520        530        540 
SNRRILAYIR EYTDADGNTE VILCVANVSR AAQAAELELS QYADKVPVEM LGGSAFPPIG 

       550        560        570        580        590        600 
QLPFLLTLPP YAFYWFLLAS RDRMPSWHIQ PTEGLPELTT LVLRKRMEEL LQAPASDTLQ 

       610        620        630        640        650        660 
STILPQYLPK RRWFAGKEGP IDAVRLCYGV RFGTATTPVL LSEIEVLSDG TATRYQLPFG 

       670        680        690        700        710        720 
LLREEQIHTA LPQQLALSRV RRAHQVGLIT DAFVLEAFIH AVMQACQDGL RLPCGDGEDG 

       730        740        750        760        770        780 
EGELRFECTE QLAGLALDEE SEVRYLSAEQ SNSSVVIGDR VVLKLIRRVN PGIHPELEMS 

       790        800        810        820        830        840 
AYLTAAGFAN ISPLLAWVSR VDEQHAPHLL MIAQGYLSNQ GDAWGWTQNT LERAIRDQME 

       850        860        870        880        890        900 
PTRNDAEAHT DALAELSGFA ALLGQRLGEM HLLLAAPTED PAFQPRPSDA QDSERWCVQI 

       910        920        930        940        950        960 
STELTHALDL LAQHRDTLDR DSQALVDDLQ QQRDGLAQHI DTLSKQAQGG LLMRVHGDLH 

       970        980        990       1000       1010       1020 
LGQVLVVQGD AYLIDFEGEP ARPLEERRAK HSPYKDVSGV LRSFDYAAAM ILRSASAVDL 

      1030       1040       1050       1060       1070       1080 
SEPARQARQR VARQYLHQSR HAFVEAYGLA TAAMPHAWQH AEGERAALEL FCLEKAAYEI 

      1090       1100 
TYEAENRPSW LAVPLHGLHG LISTWGESE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BIRD-1.
[2]"Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BIRD-1 EMBL ADR59429.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002290 Genomic DNA. Translation: ADR59429.1.
RefSeqYP_005929634.1. NC_017530.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADR59429; ADR59429; PPUBIRD1_1765.
GeneID12519995.
KEGGppb:PPUBIRD1_1765.
PATRIC45405471. VBIPsePut176522_1784.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.
OMARDGTNNE.

Enzyme and pathway databases

BioCycPPUT931281:GLIU-1762-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
IPR012811. TreS_maltokin_C_dom.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
SSF56112. SSF56112. 1 hit.
TIGRFAMsTIGR02457. TreS_Cterm. 1 hit.
TIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE4RF46_PSEPB
AccessionPrimary (citable) accession number: E4RF46
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: November 13, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)