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E4RDG6

- E4RDG6_PSEPB

UniProt

E4RDG6 - E4RDG6_PSEPB

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Protein
Submitted name: LigD
Gene
ligD, PPUBIRD1_2515
Organism
Pseudomonas putida (strain BIRD-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciPPUT931281:GLIU-2477-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigDImported
Gene namesi
Name:ligDImported
Ordered Locus Names:PPUBIRD1_2515Imported
OrganismiPseudomonas putida (strain BIRD-1)Imported
Taxonomic identifieri931281 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008715: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4RDG6-1 [UniParc]FASTAAdd to Basket

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MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR    50
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLAGVWN LFRTHLAGKK 150
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS 200
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG 250
QDIRLFTRNG HDWSSKMPRQ VAALRALGID TAWLDGEMVV ADENGMADFQ 300
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQQRRDT LRQLLEHNHC 350
DVIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC 400
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NESGELRYAG KVGTGFNTTT 450
LTSIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG 500
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRHKQANAS ENLGELRLTH 550
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 600
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA 650
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG 700
GKGIHVVVPL TRRAGWDEVK DFSHAIVSYL AKLFPERLSA VSGPKNRVGR 750
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN 800
LHERLAEVDD PWADMGKVRQ SITARMRKQL GLER 834
Length:834
Mass (Da):93,505
Last modified:February 8, 2011 - v1
Checksum:i805310EDE2C6DA3A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002290 Genomic DNA. Translation: ADR60141.1.
RefSeqiYP_005930346.1. NC_017530.1.

Genome annotation databases

EnsemblBacteriaiADR60141; ADR60141; PPUBIRD1_2515.
GeneIDi12520710.
KEGGippb:PPUBIRD1_2515.
PATRICi45406978. VBIPsePut176522_2529.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002290 Genomic DNA. Translation: ADR60141.1 .
RefSeqi YP_005930346.1. NC_017530.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADR60141 ; ADR60141 ; PPUBIRD1_2515 .
GeneIDi 12520710.
KEGGi ppb:PPUBIRD1_2515.
PATRICi 45406978. VBIPsePut176522_2529.

Phylogenomic databases

KOi K01971.
OMAi DWTIRSI.

Enzyme and pathway databases

BioCyci PPUT931281:GLIU-2477-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
    Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BIRD-1.
  2. "Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
    Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
    J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BIRD-1Imported.

Entry informationi

Entry nameiE4RDG6_PSEPB
AccessioniPrimary (citable) accession number: E4RDG6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: May 14, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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