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E4RDG6 (E4RDG6_PSEPB) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligD EMBL ADR60141.1
Ordered Locus Names:PPUBIRD1_2515 EMBL ADR60141.1
OrganismPseudomonas putida (strain BIRD-1) [Complete proteome] [HAMAP] EMBL ADR60141.1
Taxonomic identifier931281 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length834 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E4RDG6 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: 805310EDE2C6DA3A

FASTA83493,505
        10         20         30         40         50         60 
MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW 

        70         80         90        100        110        120 
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA 

       130        140        150        160        170        180 
YAKGKLRFRL QGEKLAGVWN LFRTHLAGKK EQWMLVKSHD AQARSETEYS IVEALPDSVL 

       190        200        210        220        230        240 
SERTLVPRKS AAKKATAPRS SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD 

       250        260        270        280        290        300 
GYRILARIEG QDIRLFTRNG HDWSSKMPRQ VAALRALGID TAWLDGEMVV ADENGMADFQ 

       310        320        330        340        350        360 
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQQRRDT LRQLLEHNHC DVIKYSADFD 

       370        380        390        400        410        420 
EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC KQRQEFVIVG YTDPKGSRSG 

       430        440        450        460        470        480 
FGALLLALHD NESGELRYAG KVGTGFNTTT LTSIHTRLKP LEIASPALPS PPAGAEARGV 

       490        500        510        520        530        540 
HWLRPQLLAE VAFAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRHKQANAS 

       550        560        570        580        590        600 
ENLGELRLTH PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 

       610        620        630        640        650        660 
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA TDKDFDKPDR 

       670        680        690        700        710        720 
FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK 

       730        740        750        760        770        780 
DFSHAIVSYL AKLFPERLSA VSGPKNRVGR IFIDYLRNGK GATTACAYSL RARDGLPVSV 

       790        800        810        820        830 
PIWREELAQI KAANQWNITN LHERLAEVDD PWADMGKVRQ SITARMRKQL GLER 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BIRD-1.
[2]"Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BIRD-1 EMBL ADR60141.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002290 Genomic DNA. Translation: ADR60141.1.
RefSeqYP_005930346.1. NC_017530.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADR60141; ADR60141; PPUBIRD1_2515.
GeneID12520710.
KEGGppb:PPUBIRD1_2515.
PATRIC45406978. VBIPsePut176522_2529.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAHPLDYAD.

Enzyme and pathway databases

BioCycPPUT931281:GLIU-2477-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4RDG6_PSEPB
AccessionPrimary (citable) accession number: E4RDG6
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)