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E4RDG6

- E4RDG6_PSEPB

UniProt

E4RDG6 - E4RDG6_PSEPB

Protein
Submitted name:

LigD

Gene

ligD

Organism
Pseudomonas putida (strain BIRD-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (08 Feb 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Enzyme and pathway databases

    BioCyciPPUT931281:GLIU-2477-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    LigDImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:PPUBIRD1_2515Imported
    OrganismiPseudomonas putida (strain BIRD-1)Imported
    Taxonomic identifieri931281 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000008715: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiDWTIRSI.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E4RDG6-1 [UniParc]FASTAAdd to Basket

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    MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR    50
    LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
    GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLAGVWN LFRTHLAGKK 150
    EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS 200
    SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG 250
    QDIRLFTRNG HDWSSKMPRQ VAALRALGID TAWLDGEMVV ADENGMADFQ 300
    ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQQRRDT LRQLLEHNHC 350
    DVIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC 400
    KQRQEFVIVG YTDPKGSRSG FGALLLALHD NESGELRYAG KVGTGFNTTT 450
    LTSIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG 500
    IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRHKQANAS ENLGELRLTH 550
    PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 600
    FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA 650
    TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG 700
    GKGIHVVVPL TRRAGWDEVK DFSHAIVSYL AKLFPERLSA VSGPKNRVGR 750
    IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN 800
    LHERLAEVDD PWADMGKVRQ SITARMRKQL GLER 834
    Length:834
    Mass (Da):93,505
    Last modified:February 8, 2011 - v1
    Checksum:i805310EDE2C6DA3A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002290 Genomic DNA. Translation: ADR60141.1.
    RefSeqiYP_005930346.1. NC_017530.1.

    Genome annotation databases

    EnsemblBacteriaiADR60141; ADR60141; PPUBIRD1_2515.
    GeneIDi12520710.
    KEGGippb:PPUBIRD1_2515.
    PATRICi45406978. VBIPsePut176522_2529.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002290 Genomic DNA. Translation: ADR60141.1 .
    RefSeqi YP_005930346.1. NC_017530.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADR60141 ; ADR60141 ; PPUBIRD1_2515 .
    GeneIDi 12520710.
    KEGGi ppb:PPUBIRD1_2515.
    PATRICi 45406978. VBIPsePut176522_2529.

    Phylogenomic databases

    KOi K01971.
    OMAi DWTIRSI.

    Enzyme and pathway databases

    BioCyci PPUT931281:GLIU-2477-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
      Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
      Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BIRD-1.
    2. "Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
      Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
      J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BIRD-1Imported.

    Entry informationi

    Entry nameiE4RDG6_PSEPB
    AccessioniPrimary (citable) accession number: E4RDG6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 8, 2011
    Last sequence update: February 8, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3