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Protein
Submitted name:

LigD

Gene

ligD

Organism
Pseudomonas putida (strain BIRD-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciPPUT931281:GLIU-2477-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigDImported
Gene namesi
Name:ligDImported
Ordered Locus Names:PPUBIRD1_2515Imported
OrganismiPseudomonas putida (strain BIRD-1)Imported
Taxonomic identifieri931281 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008715: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E4RDG6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLAGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS
210 220 230 240 250
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG
260 270 280 290 300
QDIRLFTRNG HDWSSKMPRQ VAALRALGID TAWLDGEMVV ADENGMADFQ
310 320 330 340 350
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQQRRDT LRQLLEHNHC
360 370 380 390 400
DVIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC
410 420 430 440 450
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NESGELRYAG KVGTGFNTTT
460 470 480 490 500
LTSIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG
510 520 530 540 550
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRHKQANAS ENLGELRLTH
560 570 580 590 600
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF
610 620 630 640 650
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA
660 670 680 690 700
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG
710 720 730 740 750
GKGIHVVVPL TRRAGWDEVK DFSHAIVSYL AKLFPERLSA VSGPKNRVGR
760 770 780 790 800
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN
810 820 830
LHERLAEVDD PWADMGKVRQ SITARMRKQL GLER
Length:834
Mass (Da):93,505
Last modified:February 8, 2011 - v1
Checksum:i805310EDE2C6DA3A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002290 Genomic DNA. Translation: ADR60141.1.
RefSeqiYP_005930346.1. NC_017530.1.

Genome annotation databases

EnsemblBacteriaiADR60141; ADR60141; PPUBIRD1_2515.
GeneIDi12520710.
KEGGippb:PPUBIRD1_2515.
PATRICi45406978. VBIPsePut176522_2529.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002290 Genomic DNA. Translation: ADR60141.1.
RefSeqiYP_005930346.1. NC_017530.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADR60141; ADR60141; PPUBIRD1_2515.
GeneIDi12520710.
KEGGippb:PPUBIRD1_2515.
PATRICi45406978. VBIPsePut176522_2529.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciPPUT931281:GLIU-2477-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome of the plant-growth promoting rhizobacteria Pseudomonas putida BIRD-1."
    Matilla M.A., Pizarro P., Roca A., Fernandez M., Duque E., Molina L., van der Lelie D., Gomez M.J., Ramos J.-L.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BIRD-1.
  2. "Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1."
    Matilla M.A., Pizarro-Tobias P., Roca A., Fernandez M., Duque E., Molina L., Wu X., van der Lelie D., Gomez M.J., Segura A., Ramos J.L.
    J. Bacteriol. 193:1290-1290(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BIRD-1Imported.

Entry informationi

Entry nameiE4RDG6_PSEPB
AccessioniPrimary (citable) accession number: E4RDG6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: January 7, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.