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E4QEE6 (E4QEE6_CALH1) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS013452

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS013452

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1001 By similarity HAMAP-Rule MF_00455
Active site1031 By similarity HAMAP-Rule MF_00455
Metal binding2311Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2951Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3061Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3381Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
E4QEE6 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: EC8056DDAF5C1D6F

FASTA43850,164
        10         20         30         40         50         60 
MKYFKDIPGV KYEGPQSDNP FAFKYYNPDE IIDGKPLKDH LRFAVAYWHT FCATGADPFG 

        70         80         90        100        110        120 
QPTIVRPWDR FSNPMDNAKA RVEAAFEFFE KLNVPFFCFH DRDIAPEGEN LRETNKNLDE 

       130        140        150        160        170        180 
IVSMIKEYLK TSKTKVLWGT ANLFSHPRYV HGAATSCNAD VFAYAAAQVK KALEVTKELG 

       190        200        210        220        230        240 
GENYVFWGGR EGYETLLNTD MELELDNLAR FLRMAVDYAK EIGFDGQFLI EPKPKEPTKH 

       250        260        270        280        290        300 
QYDFDAAHVY GFLKKYDLDK YFKLNIEVNH ATLAGHDFHH ELRFARINNM LGSIDANMGD 

       310        320        330        340        350        360 
LLLGWDTDQF PTDVRLTTLA MYEVIKMGGF DKGGLNFDAK VRRGSFELED LVIGHIAGMD 

       370        380        390        400        410        420 
AFAKGFKIAY KLVKNGVFDK FIDERYKSYK EGIGAKIVSG EANFKMLEEY ALSLDKIENK 

       430 
SGKQELLEMI LNKYMFTE

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Caldicellulosiruptor hydrothermalis 108."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Chang Y.-J., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N. expand/collapse author list , Blumer-Schuette S.E., Kelly R.M., Woyke T.
Submitted (SEP-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 108.
[2]"Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus."
Blumer-Schuette S.E., Ozdemir I., Mistry D., Lucas S., Lapidus A., Cheng J.F., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J., Woyke T., Mikhailova N., Pati A., Kyrpides N.C., Ivanova N., Detter J.C., Walston-Davenport K., Han S., Adams M.W., Kelly R.M.
J. Bacteriol. 193:1483-1484(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18901 / VKM B-2411 / 108.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002219 Genomic DNA. Translation: ADQ07765.1.
RefSeqYP_003993134.1. NC_014652.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADQ07765; ADQ07765; Calhy_2055.
GeneID9936615.
KEGGchd:Calhy_2055.
PATRIC42587789. VBICalHyd101559_2151.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000252293.
KOK01805.
OMAHTFQHEL.

Enzyme and pathway databases

BioCycCHYD632292:GHA8-2107-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4QEE6_CALH1
AccessionPrimary (citable) accession number: E4QEE6
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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