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E4NXL6 (E4NXL6_BIFBP) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=2.3.1.54 EMBL ADP36291.1
Gene names
Name:pfl EMBL ADP36291.1
Ordered Locus Names:BBPR_1235 EMBL ADP36291.1
OrganismBifidobacterium bifidum (strain PRL2010) [Complete proteome] [HAMAP] EMBL ADP36291.1
Taxonomic identifier702459 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length791 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Contains glycine radical domain. SAAS SAAS019777

Ontologies

Keywords
   Molecular functionAcyltransferase EMBL ADP36291.1
Transferase
   PTMOrganic radical PIRSR PIRSR000379-2
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular_functionformate C-acetyltransferase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site4301S-acetylcysteine intermediate By similarity
Active site4311Cysteine radical intermediate By similarity

Amino acid modifications

Modified residue7631Glycine radical By similarity PIRSR PIRSR000379-2

Sequences

Sequence LengthMass (Da)Tools
E4NXL6 [UniParc].

Last modified February 8, 2011. Version 1.
Checksum: E066B77CE57D661A

FASTA79189,051
        10         20         30         40         50         60 
MTAVDATALT AEELQAKAWD GFVEGDWQKD IDVRDFIQKN YTPYTGDESF LADATDKTKH 

        70         80         90        100        110        120 
LWKYLDDNYL AVERKQRVYD VDTHIPASID AFPAGYIDSP EVDNVVVGLQ TDVPCKRAMM 

       130        140        150        160        170        180 
PNGGWRMVEQ AIKEAGKEPD PEIKKIFTKY RKTHNDGVFG VYTKDIKIAR HNKILTGLPD 

       190        200        210        220        230        240 
AYGRGRIIGD YRRVALYGVA ALIKFKQRDK DSVPYRNDFT EPEIEHWIRF REEHDEQIKA 

       250        260        270        280        290        300 
LKQLINLGNE YGLDLTRPAQ TAQEAVQWTY MGYLASVKSQ DGAAMSFGRN SAFFDCYFER 

       310        320        330        340        350        360 
DLQSGKITET DAQEIIDNIV MKLRIVRFLR TKDYDAIFSG DPYWATWSDA GFGDDGRPMV 

       370        380        390        400        410        420 
TKTSFRLLNT LTLEHLGPGP EPNITIFWDP KLPEGYKRFC AKISIDTSAI QYESDKEIRN 

       430        440        450        460        470        480 
HWGDDAAIAC CVSPMRVGKQ MQFFAARVNS AKALLYAING GRDEMTGMQV IDKGVIEPIA 

       490        500        510        520        530        540 
PEADGTLDYE KVKNNYEKAL NWLSEVYVKA LNIIHYMHDK YAYESIEMAL HDKEVYRTLG 

       550        560        570        580        590        600 
CGMSGLSIAA DSLSAVKYAK VYPIYNKDAK NLEGHEYEYV EGADDDLIVG YRTEGDFPIY 

       610        620        630        640        650        660 
GNDDDRADDI AKWVVSTVMG QVKRLPVYRG AVPTQSILTI TSNVEYGKNT GSFPSRHKKG 

       670        680        690        700        710        720 
TPYAPGANPE NGMDSHGMLP SMFSVGKIDY NDALDGISLT NTITPDGLGR DEDERIGNLV 

       730        740        750        760        770        780 
GILDAGNGHG LYHANINVLR KEQLEDAVEH PEKYPHLTVR VSGYAVNFVK LTKEQQLDVI 

       790 
SRTFHQGSVT D 

« Hide

References

[1]"Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging."
Turroni F., Bottacini F., Foroni E., Mulder I., Kim J.H., Zomer A., Sanchez B., Bidossi A., Ferrarini A., Giubellini V., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Fitzgerald G.F., Mills D., Margolles A., Kelly D., van Sinderen D., Ventura M.
Proc. Natl. Acad. Sci. U.S.A. 107:19514-19519(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PRL2010 EMBL ADP36291.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001840 Genomic DNA. Translation: ADP36291.1.
RefSeqYP_003971328.1. NC_014638.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADP36291; ADP36291; BBPR_1235.
GeneID9889368.
KEGGbbp:BBPR_1235.
PATRIC42578180. VBIBifBif153886_1277.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000011346.
KOK00656.

Enzyme and pathway databases

BioCycBBIF702459:GHBC-1192-MONOMER.

Family and domain databases

InterProIPR005949. Form_AcTrfase.
IPR019777. Form_AcTrfase_GR_CS.
IPR001150. Gly_radical.
IPR004184. PFL_dom.
[Graphical view]
PfamPF01228. Gly_radical. 1 hit.
PF02901. PFL. 1 hit.
[Graphical view]
PIRSFPIRSF000379. For_Ac_trans_1. 1 hit.
TIGRFAMsTIGR01255. pyr_form_ly_1. 1 hit.
PROSITEPS00850. GLY_RADICAL_1. 1 hit.
PS51149. GLY_RADICAL_2. 1 hit.
PS51554. PFL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE4NXL6_BIFBP
AccessionPrimary (citable) accession number: E4NXL6
Entry history
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: October 16, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)