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Protein
Submitted name:

Cocaine-and amphetamine-regulated transcript ch6

Gene

cart ch6

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cocaine-and amphetamine-regulated transcript ch6Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:cart ch6Imported
Synonyms:LOC100533499Imported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias
ProteomesiUP000001038 Componenti: Chromosome 6

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000018071.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000018319.
OMAiRINPWEK.
OrthoDBiEOG7JDR0T.
TreeFamiTF332948.

Family and domain databases

Gene3Di4.10.40.30. 1 hit.
InterProiIPR009106. CART.
[Graphical view]
PANTHERiPTHR16655. PTHR16655. 1 hit.
PfamiPF06373. CART. 1 hit.
[Graphical view]
SUPFAMiSSF64546. SSF64546. 1 hit.

Sequencei

Sequence statusi: Complete.

E3WET7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWAQAVLCAA VLCALCPAGR TEAERDERQV PDLQDSRYNS NRLLGALHDV
60 70 80 90 100
LERLQTTRIN PWEKKYGQVP SCDLGEHCAI RKGSRIGKMC DCPRGAFCNF

FLLKCL
Length:106
Mass (Da):11,942
Last modified:February 8, 2011 - v1
Checksum:iFDFA259E2C576CE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04008472 Genomic DNA. No translation available.
AB568294 mRNA. Translation: BAJ39823.1.
RefSeqiNP_001191710.1. NM_001204781.1.
UniGeneiOla.11799.

Genome annotation databases

EnsembliENSORLT00000018072; ENSORLP00000018071; ENSORLG00000014424.
GeneIDi100533499.
KEGGiola:100533499.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04008472 Genomic DNA. No translation available.
AB568294 mRNA. Translation: BAJ39823.1.
RefSeqiNP_001191710.1. NM_001204781.1.
UniGeneiOla.11799.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8090.ENSORLP00000018071.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSORLT00000018072; ENSORLP00000018071; ENSORLG00000014424.
GeneIDi100533499.
KEGGiola:100533499.

Phylogenomic databases

GeneTreeiENSGT00390000018319.
OMAiRINPWEK.
OrthoDBiEOG7JDR0T.
TreeFamiTF332948.

Family and domain databases

Gene3Di4.10.40.30. 1 hit.
InterProiIPR009106. CART.
[Graphical view]
PANTHERiPTHR16655. PTHR16655. 1 hit.
PfamiPF06373. CART. 1 hit.
[Graphical view]
SUPFAMiSSF64546. SSF64546. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Hd-rRImported.
  2. "Multiple cocaine- and amphetamine-regulated transcript (CART) genes in medaka, Oryzias latipes: cloning, tissue distribution and effect of starvation."
    Murashita K., Kurokawa T.
    Gen. Comp. Endocrinol. 170:494-500(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Hd-rRImported.

Entry informationi

Entry nameiE3WET7_ORYLA
AccessioniPrimary (citable) accession number: E3WET7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 8, 2011
Last sequence update: February 8, 2011
Last modified: July 22, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.