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E3S4W2 (E3S4W2_PYRTT) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length988 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
E3S4W2 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 6738E9AB3B578986

FASTA988113,531
        10         20         30         40         50         60 
MTEDTPMPDA DAIRENTLMY GHDDDLDDKY PTRPINLHKT LPFHTLFTDL FNPLMETQKR 

        70         80         90        100        110        120 
KQPAGARRRV GPHGHSNMSP HEAKRNIIQR FIANWRKQVG NDFYPAMRLI IPEKDRDRAM 

       130        140        150        160        170        180 
YGLKEKAIAK VLIKLTRIGK DSDDAKHMLN WKLPGQLNKA SASTAGDFAG RCYEILSTRQ 

       190        200        210        220        230        240 
LKTEYSDMTI AEVNNALDRL SQVGAEDEQV KIFQRFYRRM NAEEMTWLIR MILRQMKIGA 

       250        260        270        280        290        300 
TEKTFLDIWH PDAETLFNIS SNLRRVCWEL FDIELRLQGE DTGLSLMQCF QPQLAQFQDK 

       310        320        330        340        350        360 
VGSFEKLVTR FKGDENDDTF WIEEKLDGER MQLHMMEDPD APGGKLFGFW SRKAKDYAYL 

       370        380        390        400        410        420 
YGRHFDGDEA GALTRFITDA FGENVRNIIL DGEMITWDME TDHIVGFGTL KTAALSEKEN 

       430        440        450        460        470        480 
KTNKNTGQRP LFRVFDCVYL NDKLLTQYTL RDRRRALESA VKGVTRRLEV HPYIEARSHT 

       490        500        510        520        530        540 
EIEPALRKVI AESSEGLVLK NPRSMYCLNQ RNNDWMKVKP EYMSEFGESL DCIVVGGYFG 

       550        560        570        580        590        600 
SGHRGGVHSS FLCALLTDKD AKPGDPKYEH CWSFFKVGGG FSREDYAAIR GRTEGKWHNW 

       610        620        630        640        650        660 
DRRRPPPFIE LGGHEQNRQH ERPDQWIRPS DSVVLECKAA SVESSDKFRS TLTLRFPRFK 

       670        680        690        700        710        720 
LLRVDKRWDQ ALSIQEFLDV KSRAEKEKSE KEKEFKIEQS RRKKARTTKK PLTVVGDDAV 

       730        740        750        760        770        780 
ITPYAGAVSK VFEGLTFYIM TEQVHPSKKS KADLEALVKA NGGRLIQRDT TAKDLVIVAD 

       790        800        810        820        830        840 
KRLIKVASLE KRGTNNIVKP IWLQDCIMQN ERDAGAPPYL LPFEPNRHMY YLHDDDQMDY 

       850        860        870        880        890        900 
EANLDDNGDS YARDITDVDE MRRLLDGVEI PKSKFSRDAF LEQLEGHGED FSQFKTYMFQ 

       910        920        930        940        950        960 
NVKAKFSGEV GSELRVRLAK NYVRFGGGQV ADGGDEEGVT HVVVADGQTS AAKGKARVNG 

       970        980 
LARVVGLGWI EKCWEEGTRI DEERFQWG 

« Hide

References

[1]"A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres."
Ellwood S.R., Liu Z., Syme R.A., Lai Z., Hane J.K., Keiper F., Moffat C.S., Oliver R.P., Friesen T.L.
Genome Biol. 11:R109.1-R109.14(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 0-1 EMBL EFQ86998.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL537210 Genomic DNA. Translation: EFQ86998.1.
RefSeqXP_003304917.1. XM_003304869.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiEFQ86998; EFQ86998; PTT_17650.
GeneID10516960.
KEGGpte:PTT_17650.

Phylogenomic databases

KOK10777.
OrthoDBEOG7QC84G.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3S4W2_PYRTT
AccessionPrimary (citable) accession number: E3S4W2
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: November 13, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)